Strain Fitness in Shewanella oneidensis MR-1 around SO3952

Experiment: copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3949 and SO3950 are separated by 16 nucleotidesSO3950 and SO3951 are separated by 5 nucleotidesSO3951 and SO3952 are separated by 11 nucleotidesSO3952 and SO3953 are separated by 56 nucleotidesSO3953 and SO3954 overlap by 4 nucleotides SO3949: SO3949 - BolA/YrbA family protein (NCBI ptt file), at 4,094,712 to 4,094,963 SO3949 SO3950: SO3950 - SpoIIAA family protein (NCBI ptt file), at 4,094,980 to 4,095,264 SO3950 SO3951: SO3951 - conserved hypothetical protein (NCBI ptt file), at 4,095,270 to 4,095,923 SO3951 SO3952: SO3952 - mce-related protein (NCBI ptt file), at 4,095,935 to 4,096,408 SO3952 SO3953: SO3953 - conserved hypothetical protein TIGR00056 (NCBI ptt file), at 4,096,465 to 4,097,250 SO3953 SO3954: SO3954 - ABC transporter, ATP-binding protein, putative (NCBI ptt file), at 4,097,247 to 4,098,065 SO3954 Position (kb) 4095 4096 4097Strain fitness (log2 ratio) -3 -2 -1 0 1at 4095.244 kb on - strandat 4095.244 kb on - strandat 4095.274 kb on - strandat 4095.388 kb on - strand, within SO3951at 4095.664 kb on - strand, within SO3951at 4095.677 kb on - strand, within SO3951at 4095.965 kb on - strandat 4095.997 kb on - strand, within SO3952at 4095.997 kb on - strand, within SO3952at 4095.997 kb on - strand, within SO3952at 4096.071 kb on - strand, within SO3952at 4096.195 kb on - strand, within SO3952at 4096.232 kb on - strand, within SO3952at 4096.293 kb on - strand, within SO3952at 4096.293 kb on - strand, within SO3952at 4096.293 kb on - strand, within SO3952at 4096.293 kb on - strand, within SO3952at 4096.293 kb on - strand, within SO3952at 4096.431 kb on - strandat 4096.673 kb on - strand, within SO3953at 4096.864 kb on - strand, within SO3953at 4096.864 kb on - strand, within SO3953at 4096.930 kb on - strand, within SO3953at 4096.942 kb on - strand, within SO3953at 4097.043 kb on - strand, within SO3953at 4097.043 kb on - strand, within SO3953at 4097.043 kb on - strand, within SO3953at 4097.043 kb on - strand, within SO3953at 4097.136 kb on - strand, within SO3953at 4097.282 kb on + strandat 4097.317 kb on - strandat 4097.319 kb on + strandat 4097.342 kb on + strand, within SO3954at 4097.349 kb on - strand, within SO3954at 4097.367 kb on + strand, within SO3954at 4097.373 kb on - strand, within SO3954

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.64 mM
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4,095,244 - -0.5
4,095,244 - +1.2
4,095,274 - -0.3
4,095,388 - SO3951 0.18 -1.8
4,095,664 - SO3951 0.60 -0.9
4,095,677 - SO3951 0.62 -1.2
4,095,965 - -1.1
4,095,997 - SO3952 0.13 -1.7
4,095,997 - SO3952 0.13 -0.8
4,095,997 - SO3952 0.13 -0.9
4,096,071 - SO3952 0.29 -1.5
4,096,195 - SO3952 0.55 -0.8
4,096,232 - SO3952 0.63 -1.4
4,096,293 - SO3952 0.76 -1.3
4,096,293 - SO3952 0.76 -0.5
4,096,293 - SO3952 0.76 -0.7
4,096,293 - SO3952 0.76 -0.6
4,096,293 - SO3952 0.76 -0.6
4,096,431 - -0.2
4,096,673 - SO3953 0.26 -1.2
4,096,864 - SO3953 0.51 -1.6
4,096,864 - SO3953 0.51 -3.3
4,096,930 - SO3953 0.59 -1.0
4,096,942 - SO3953 0.61 -1.4
4,097,043 - SO3953 0.74 -3.0
4,097,043 - SO3953 0.74 -0.3
4,097,043 - SO3953 0.74 -1.0
4,097,043 - SO3953 0.74 -1.0
4,097,136 - SO3953 0.85 -0.4
4,097,282 + -1.6
4,097,317 - -0.6
4,097,319 + -2.8
4,097,342 + SO3954 0.12 -2.0
4,097,349 - SO3954 0.12 -1.6
4,097,367 + SO3954 0.15 -1.3
4,097,373 - SO3954 0.15 -1.4

Or see this region's nucleotide sequence