Strain Fitness in Shewanella oneidensis MR-1 around SO3559

Experiment: copper (II) chloride 0.64 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO3557 and SO3558 are separated by 422 nucleotidesSO3558 and gshA are separated by 17 nucleotidesgshA and SO3560 are separated by 192 nucleotides SO3557: SO3557 - conserved hypothetical protein (NCBI ptt file), at 3,715,491 to 3,716,108 SO3557 SO3558: SO3558 - hypothetical protein (NCBI ptt file), at 3,716,531 to 3,716,974 SO3558 SO3559: gshA - glutamate--cysteine ligase (NCBI ptt file), at 3,716,992 to 3,718,686 gshA SO3560: SO3560 - peptidase, M16 family (NCBI ptt file), at 3,718,879 to 3,721,728 SO3560 Position (kb) 3716 3717 3718 3719Strain fitness (log2 ratio) -3 -2 -1 0 1at 3716.061 kb on + strandat 3716.090 kb on - strandat 3716.163 kb on - strandat 3716.250 kb on - strandat 3716.554 kb on - strandat 3716.624 kb on + strand, within SO3558at 3716.646 kb on + strand, within SO3558at 3716.701 kb on + strand, within SO3558at 3716.717 kb on - strand, within SO3558at 3716.827 kb on + strand, within SO3558at 3716.841 kb on - strand, within SO3558at 3716.875 kb on + strand, within SO3558at 3716.975 kb on - strandat 3717.029 kb on + strandat 3717.276 kb on - strand, within gshAat 3717.276 kb on - strand, within gshAat 3717.390 kb on - strand, within gshAat 3717.581 kb on - strand, within gshAat 3717.880 kb on - strand, within gshAat 3717.982 kb on - strand, within gshAat 3718.358 kb on + strand, within gshAat 3718.402 kb on + strand, within gshAat 3718.410 kb on - strand, within gshAat 3718.410 kb on - strand, within gshAat 3718.410 kb on - strand, within gshAat 3718.524 kb on - strandat 3718.580 kb on - strandat 3718.610 kb on - strandat 3718.746 kb on + strandat 3718.746 kb on + strandat 3718.754 kb on + strandat 3718.778 kb on - strandat 3718.844 kb on + strandat 3718.906 kb on + strandat 3718.914 kb on - strandat 3719.130 kb on + strandat 3719.138 kb on - strandat 3719.163 kb on + strandat 3719.315 kb on + strand, within SO3560at 3719.337 kb on + strand, within SO3560at 3719.345 kb on - strand, within SO3560at 3719.424 kb on - strand, within SO3560at 3719.465 kb on - strand, within SO3560at 3719.470 kb on - strand, within SO3560at 3719.544 kb on - strand, within SO3560at 3719.585 kb on + strand, within SO3560at 3719.588 kb on - strand, within SO3560at 3719.632 kb on + strand, within SO3560at 3719.685 kb on + strand, within SO3560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.64 mM
remove
3,716,061 + -0.1
3,716,090 - +0.3
3,716,163 - -0.0
3,716,250 - +0.2
3,716,554 - +0.1
3,716,624 + SO3558 0.21 -0.5
3,716,646 + SO3558 0.26 +0.2
3,716,701 + SO3558 0.38 +0.8
3,716,717 - SO3558 0.42 -0.2
3,716,827 + SO3558 0.67 -0.3
3,716,841 - SO3558 0.70 -0.1
3,716,875 + SO3558 0.77 +0.2
3,716,975 - +0.1
3,717,029 + +0.1
3,717,276 - gshA SO3559 0.17 -3.2
3,717,276 - gshA SO3559 0.17 -1.4
3,717,390 - gshA SO3559 0.23 -1.6
3,717,581 - gshA SO3559 0.35 -1.2
3,717,880 - gshA SO3559 0.52 +0.5
3,717,982 - gshA SO3559 0.58 -2.1
3,718,358 + gshA SO3559 0.81 -2.5
3,718,402 + gshA SO3559 0.83 -1.9
3,718,410 - gshA SO3559 0.84 -1.1
3,718,410 - gshA SO3559 0.84 -2.9
3,718,410 - gshA SO3559 0.84 -3.5
3,718,524 - -3.3
3,718,580 - -0.8
3,718,610 - -0.3
3,718,746 + +0.2
3,718,746 + +0.2
3,718,754 + +0.5
3,718,778 - -0.2
3,718,844 + -0.2
3,718,906 + -0.4
3,718,914 - -0.3
3,719,130 + -0.4
3,719,138 - -0.6
3,719,163 + -0.8
3,719,315 + SO3560 0.15 -0.4
3,719,337 + SO3560 0.16 -0.7
3,719,345 - SO3560 0.16 -1.2
3,719,424 - SO3560 0.19 -0.2
3,719,465 - SO3560 0.21 +0.1
3,719,470 - SO3560 0.21 +0.0
3,719,544 - SO3560 0.23 -0.3
3,719,585 + SO3560 0.25 -0.3
3,719,588 - SO3560 0.25 -0.8
3,719,632 + SO3560 0.26 -0.3
3,719,685 + SO3560 0.28 -1.1

Or see this region's nucleotide sequence