Experiment: copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3557 and SO3558 are separated by 422 nucleotides SO3558 and gshA are separated by 17 nucleotides gshA and SO3560 are separated by 192 nucleotides
SO3557: SO3557 - conserved hypothetical protein (NCBI ptt file), at 3,715,491 to 3,716,108
SO3557
SO3558: SO3558 - hypothetical protein (NCBI ptt file), at 3,716,531 to 3,716,974
SO3558
SO3559: gshA - glutamate--cysteine ligase (NCBI ptt file), at 3,716,992 to 3,718,686
gshA
SO3560: SO3560 - peptidase, M16 family (NCBI ptt file), at 3,718,879 to 3,721,728
SO3560
Position (kb)
3716
3717
3718
3719 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3716.061 kb on + strand at 3716.090 kb on - strand at 3716.163 kb on - strand at 3716.250 kb on - strand at 3716.554 kb on - strand at 3716.624 kb on + strand, within SO3558 at 3716.646 kb on + strand, within SO3558 at 3716.701 kb on + strand, within SO3558 at 3716.717 kb on - strand, within SO3558 at 3716.827 kb on + strand, within SO3558 at 3716.841 kb on - strand, within SO3558 at 3716.875 kb on + strand, within SO3558 at 3716.975 kb on - strand at 3717.029 kb on + strand at 3717.276 kb on - strand, within gshA at 3717.276 kb on - strand, within gshA at 3717.390 kb on - strand, within gshA at 3717.581 kb on - strand, within gshA at 3717.880 kb on - strand, within gshA at 3717.982 kb on - strand, within gshA at 3718.358 kb on + strand, within gshA at 3718.402 kb on + strand, within gshA at 3718.410 kb on - strand, within gshA at 3718.410 kb on - strand, within gshA at 3718.410 kb on - strand, within gshA at 3718.524 kb on - strand at 3718.580 kb on - strand at 3718.610 kb on - strand at 3718.746 kb on + strand at 3718.746 kb on + strand at 3718.754 kb on + strand at 3718.778 kb on - strand at 3718.844 kb on + strand at 3718.906 kb on + strand at 3718.914 kb on - strand at 3719.130 kb on + strand at 3719.138 kb on - strand at 3719.163 kb on + strand at 3719.315 kb on + strand, within SO3560 at 3719.337 kb on + strand, within SO3560 at 3719.345 kb on - strand, within SO3560 at 3719.424 kb on - strand, within SO3560 at 3719.465 kb on - strand, within SO3560 at 3719.470 kb on - strand, within SO3560 at 3719.544 kb on - strand, within SO3560 at 3719.585 kb on + strand, within SO3560 at 3719.588 kb on - strand, within SO3560 at 3719.632 kb on + strand, within SO3560 at 3719.685 kb on + strand, within SO3560
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 0.64 mM remove 3,716,061 + -0.1 3,716,090 - +0.3 3,716,163 - -0.0 3,716,250 - +0.2 3,716,554 - +0.1 3,716,624 + SO3558 0.21 -0.5 3,716,646 + SO3558 0.26 +0.2 3,716,701 + SO3558 0.38 +0.8 3,716,717 - SO3558 0.42 -0.2 3,716,827 + SO3558 0.67 -0.3 3,716,841 - SO3558 0.70 -0.1 3,716,875 + SO3558 0.77 +0.2 3,716,975 - +0.1 3,717,029 + +0.1 3,717,276 - gshA SO3559 0.17 -3.2 3,717,276 - gshA SO3559 0.17 -1.4 3,717,390 - gshA SO3559 0.23 -1.6 3,717,581 - gshA SO3559 0.35 -1.2 3,717,880 - gshA SO3559 0.52 +0.5 3,717,982 - gshA SO3559 0.58 -2.1 3,718,358 + gshA SO3559 0.81 -2.5 3,718,402 + gshA SO3559 0.83 -1.9 3,718,410 - gshA SO3559 0.84 -1.1 3,718,410 - gshA SO3559 0.84 -2.9 3,718,410 - gshA SO3559 0.84 -3.5 3,718,524 - -3.3 3,718,580 - -0.8 3,718,610 - -0.3 3,718,746 + +0.2 3,718,746 + +0.2 3,718,754 + +0.5 3,718,778 - -0.2 3,718,844 + -0.2 3,718,906 + -0.4 3,718,914 - -0.3 3,719,130 + -0.4 3,719,138 - -0.6 3,719,163 + -0.8 3,719,315 + SO3560 0.15 -0.4 3,719,337 + SO3560 0.16 -0.7 3,719,345 - SO3560 0.16 -1.2 3,719,424 - SO3560 0.19 -0.2 3,719,465 - SO3560 0.21 +0.1 3,719,470 - SO3560 0.21 +0.0 3,719,544 - SO3560 0.23 -0.3 3,719,585 + SO3560 0.25 -0.3 3,719,588 - SO3560 0.25 -0.8 3,719,632 + SO3560 0.26 -0.3 3,719,685 + SO3560 0.28 -1.1
Or see this region's nucleotide sequence