Strain Fitness in Shewanella oneidensis MR-1 around SO1017

Experiment: copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoG and nuoF are separated by 41 nucleotidesnuoF and SO1017.1 overlap by 558 nucleotidesSO1017.1 and nuoE are separated by 359 nucleotidesnuoE and nuoCD are separated by 81 nucleotides SO1016: nuoG - NADH dehydrogenase I, G subunit (NCBI ptt file), at 1,052,611 to 1,055,340 nuoG SO1017: nuoF - NADH dehydrogenase I, F subunit (NCBI ptt file), at 1,055,382 to 1,056,767 nuoF SO1017.1: SO1017.1 - hypothetical protein (NCBI ptt file), at 1,056,210 to 1,056,404 SO1017.1 SO1018: nuoE - NADH dehydrogenase I, E subunit (NCBI ptt file), at 1,056,764 to 1,057,306 nuoE SO1019: nuoCD - NADH dehydrogenase I, C/D subunits (NCBI ptt file), at 1,057,388 to 1,059,193 nuoCD Position (kb) 1055 1056 1057Strain fitness (log2 ratio) -3 -2 -1 0 1at 1054.436 kb on - strand, within nuoGat 1054.516 kb on - strand, within nuoGat 1054.526 kb on - strand, within nuoGat 1054.528 kb on + strand, within nuoGat 1054.528 kb on + strand, within nuoGat 1054.706 kb on + strand, within nuoGat 1054.807 kb on - strand, within nuoGat 1054.818 kb on - strand, within nuoGat 1054.847 kb on + strand, within nuoGat 1055.019 kb on + strand, within nuoGat 1055.038 kb on - strand, within nuoGat 1055.254 kb on + strandat 1055.275 kb on + strandat 1055.349 kb on + strandat 1055.424 kb on - strandat 1055.509 kb on - strandat 1055.629 kb on + strand, within nuoFat 1055.637 kb on - strand, within nuoFat 1055.653 kb on + strand, within nuoFat 1055.756 kb on - strand, within nuoFat 1055.788 kb on + strand, within nuoFat 1055.796 kb on - strand, within nuoFat 1055.796 kb on - strand, within nuoFat 1055.862 kb on - strand, within nuoFat 1055.933 kb on - strand, within nuoFat 1055.954 kb on - strand, within nuoFat 1055.975 kb on + strand, within nuoFat 1056.046 kb on - strand, within nuoFat 1056.060 kb on - strand, within nuoFat 1056.064 kb on + strand, within nuoFat 1056.064 kb on + strand, within nuoFat 1056.152 kb on + strand, within nuoFat 1056.160 kb on + strand, within nuoFat 1056.160 kb on - strand, within nuoFat 1056.182 kb on - strand, within nuoFat 1056.266 kb on - strandat 1056.271 kb on + strandat 1056.271 kb on + strandat 1056.279 kb on - strandat 1056.279 kb on - strandat 1056.299 kb on + strandat 1056.370 kb on - strandat 1056.441 kb on - strand, within nuoFat 1056.443 kb on - strand, within nuoFat 1056.491 kb on - strand, within nuoFat 1056.568 kb on - strand, within nuoFat 1056.591 kb on + strand, within nuoFat 1056.594 kb on - strand, within nuoFat 1056.644 kb on + strandat 1056.652 kb on - strandat 1056.696 kb on + strandat 1056.755 kb on + strandat 1056.762 kb on + strandat 1056.763 kb on - strandat 1056.763 kb on - strandat 1056.763 kb on - strandat 1056.770 kb on - strandat 1056.802 kb on + strandat 1056.810 kb on - strandat 1056.872 kb on + strand, within nuoEat 1056.883 kb on + strand, within nuoEat 1056.942 kb on - strand, within nuoEat 1056.945 kb on + strand, within nuoEat 1056.947 kb on + strand, within nuoEat 1057.121 kb on + strand, within nuoEat 1057.148 kb on - strand, within nuoEat 1057.150 kb on + strand, within nuoEat 1057.150 kb on + strand, within nuoEat 1057.158 kb on - strand, within nuoEat 1057.301 kb on + strandat 1057.368 kb on - strandat 1057.386 kb on + strandat 1057.392 kb on - strandat 1057.402 kb on - strandat 1057.402 kb on - strandat 1057.452 kb on + strandat 1057.455 kb on - strandat 1057.557 kb on - strandat 1057.707 kb on + strand, within nuoCDat 1057.742 kb on - strand, within nuoCDat 1057.742 kb on - strand, within nuoCD

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.64 mM
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1,054,436 - nuoG SO1016 0.67 -0.5
1,054,516 - nuoG SO1016 0.70 -1.1
1,054,526 - nuoG SO1016 0.70 -1.1
1,054,528 + nuoG SO1016 0.70 +0.2
1,054,528 + nuoG SO1016 0.70 +0.2
1,054,706 + nuoG SO1016 0.77 -0.9
1,054,807 - nuoG SO1016 0.80 -0.3
1,054,818 - nuoG SO1016 0.81 -1.1
1,054,847 + nuoG SO1016 0.82 -3.1
1,055,019 + nuoG SO1016 0.88 -0.7
1,055,038 - nuoG SO1016 0.89 -0.8
1,055,254 + -1.1
1,055,275 + -0.8
1,055,349 + -0.8
1,055,424 - -0.2
1,055,509 - -1.1
1,055,629 + nuoF SO1017 0.18 -1.1
1,055,637 - nuoF SO1017 0.18 -0.8
1,055,653 + nuoF SO1017 0.20 -1.6
1,055,756 - nuoF SO1017 0.27 -0.4
1,055,788 + nuoF SO1017 0.29 -0.5
1,055,796 - nuoF SO1017 0.30 -1.8
1,055,796 - nuoF SO1017 0.30 -1.1
1,055,862 - nuoF SO1017 0.35 +0.1
1,055,933 - nuoF SO1017 0.40 -0.5
1,055,954 - nuoF SO1017 0.41 -0.6
1,055,975 + nuoF SO1017 0.43 +0.2
1,056,046 - nuoF SO1017 0.48 -0.9
1,056,060 - nuoF SO1017 0.49 -0.7
1,056,064 + nuoF SO1017 0.49 -0.4
1,056,064 + nuoF SO1017 0.49 -1.4
1,056,152 + nuoF SO1017 0.56 -0.3
1,056,160 + nuoF SO1017 0.56 -0.9
1,056,160 - nuoF SO1017 0.56 -1.4
1,056,182 - nuoF SO1017 0.58 -1.7
1,056,266 - -0.5
1,056,271 + -0.7
1,056,271 + -0.7
1,056,279 - -0.6
1,056,279 - -0.6
1,056,299 + -1.6
1,056,370 - -0.7
1,056,441 - nuoF SO1017 0.76 -1.8
1,056,443 - nuoF SO1017 0.77 -1.6
1,056,491 - nuoF SO1017 0.80 -0.6
1,056,568 - nuoF SO1017 0.86 -1.2
1,056,591 + nuoF SO1017 0.87 -1.0
1,056,594 - nuoF SO1017 0.87 -1.4
1,056,644 + -1.2
1,056,652 - -0.0
1,056,696 + -1.0
1,056,755 + -0.6
1,056,762 + -2.2
1,056,763 - -0.2
1,056,763 - -0.9
1,056,763 - -1.8
1,056,770 - -0.4
1,056,802 + -0.4
1,056,810 - -1.0
1,056,872 + nuoE SO1018 0.20 -0.6
1,056,883 + nuoE SO1018 0.22 -0.8
1,056,942 - nuoE SO1018 0.33 -3.6
1,056,945 + nuoE SO1018 0.33 -0.6
1,056,947 + nuoE SO1018 0.34 -0.6
1,057,121 + nuoE SO1018 0.66 -1.1
1,057,148 - nuoE SO1018 0.71 -1.2
1,057,150 + nuoE SO1018 0.71 -0.7
1,057,150 + nuoE SO1018 0.71 -1.1
1,057,158 - nuoE SO1018 0.73 -0.7
1,057,301 + -0.3
1,057,368 - +0.3
1,057,386 + -0.6
1,057,392 - -0.7
1,057,402 - -0.7
1,057,402 - -0.9
1,057,452 + -1.0
1,057,455 - -0.8
1,057,557 - -1.4
1,057,707 + nuoCD SO1019 0.18 +0.0
1,057,742 - nuoCD SO1019 0.20 -0.0
1,057,742 - nuoCD SO1019 0.20 -1.7

Or see this region's nucleotide sequence