Strain Fitness in Shewanella oneidensis MR-1 around SO0802

Experiment: copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0801 and SO0802 are separated by 349 nucleotidesSO0802 and SO0804 are separated by 293 nucleotidesSO0804 and SO0805 are separated by 79 nucleotides SO0801: SO0801 - conserved hypothetical protein (NCBI ptt file), at 813,428 to 814,342 SO0801 SO0802: SO0802 - MATE efflux family protein (NCBI ptt file), at 814,692 to 816,053 SO0802 SO0804: SO0804 - hypothetical protein (NCBI ptt file), at 816,347 to 816,952 SO0804 SO0805: SO0805 - CBS domain protein (NCBI ptt file), at 817,032 to 817,550 SO0805 Position (kb) 814 815 816 817Strain fitness (log2 ratio) -2 -1 0 1at 813.701 kb on + strand, within SO0801at 813.708 kb on + strand, within SO0801at 813.709 kb on - strand, within SO0801at 813.860 kb on + strand, within SO0801at 813.862 kb on - strand, within SO0801at 813.915 kb on + strand, within SO0801at 814.028 kb on + strand, within SO0801at 814.211 kb on + strand, within SO0801at 814.211 kb on + strand, within SO0801at 814.249 kb on + strand, within SO0801at 814.249 kb on + strand, within SO0801at 814.249 kb on + strand, within SO0801at 814.257 kb on - strandat 814.309 kb on + strandat 814.430 kb on - strandat 814.506 kb on - strandat 814.506 kb on - strandat 814.550 kb on + strandat 814.552 kb on - strandat 814.582 kb on - strandat 814.594 kb on - strandat 814.651 kb on + strandat 814.683 kb on + strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.711 kb on - strandat 814.713 kb on - strandat 814.721 kb on + strandat 814.737 kb on + strandat 814.857 kb on - strand, within SO0802at 814.899 kb on + strand, within SO0802at 814.908 kb on + strand, within SO0802at 814.908 kb on + strand, within SO0802at 814.914 kb on - strand, within SO0802at 814.930 kb on - strand, within SO0802at 814.942 kb on + strand, within SO0802at 814.942 kb on + strand, within SO0802at 814.942 kb on + strand, within SO0802at 814.989 kb on + strand, within SO0802at 815.059 kb on + strand, within SO0802at 815.060 kb on + strand, within SO0802at 815.060 kb on + strand, within SO0802at 815.087 kb on - strand, within SO0802at 815.132 kb on - strand, within SO0802at 815.176 kb on + strand, within SO0802at 815.176 kb on + strand, within SO0802at 815.199 kb on - strand, within SO0802at 815.210 kb on - strand, within SO0802at 815.210 kb on - strand, within SO0802at 815.244 kb on + strand, within SO0802at 815.284 kb on + strand, within SO0802at 815.303 kb on + strand, within SO0802at 815.369 kb on + strand, within SO0802at 815.377 kb on - strand, within SO0802at 815.384 kb on + strand, within SO0802at 815.444 kb on - strand, within SO0802at 815.486 kb on + strand, within SO0802at 815.498 kb on + strand, within SO0802at 815.498 kb on + strand, within SO0802at 815.506 kb on - strand, within SO0802at 815.506 kb on - strand, within SO0802at 815.506 kb on - strand, within SO0802at 815.506 kb on - strand, within SO0802at 815.508 kb on + strand, within SO0802at 815.508 kb on + strand, within SO0802at 815.508 kb on + strand, within SO0802at 815.508 kb on + strand, within SO0802at 815.579 kb on + strand, within SO0802at 815.619 kb on - strand, within SO0802at 815.717 kb on - strand, within SO0802at 815.749 kb on - strand, within SO0802at 815.865 kb on - strand, within SO0802at 815.881 kb on + strand, within SO0802at 815.923 kb on - strandat 815.931 kb on - strandat 816.410 kb on - strand, within SO0804at 816.479 kb on + strand, within SO0804at 816.490 kb on + strand, within SO0804at 816.601 kb on - strand, within SO0804at 816.643 kb on - strand, within SO0804at 816.685 kb on - strand, within SO0804at 816.694 kb on - strand, within SO0804at 816.814 kb on + strand, within SO0804at 816.893 kb on + strandat 816.893 kb on + strandat 816.893 kb on + strandat 816.893 kb on + strandat 816.901 kb on - strandat 816.901 kb on - strandat 816.901 kb on - strandat 816.901 kb on - strandat 816.901 kb on - strandat 816.901 kb on - strandat 816.901 kb on - strandat 816.986 kb on + strandat 816.986 kb on + strandat 816.994 kb on - strandat 817.022 kb on + strandat 817.029 kb on + strandat 817.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.64 mM
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813,701 + SO0801 0.30 +0.7
813,708 + SO0801 0.31 -1.7
813,709 - SO0801 0.31 +1.2
813,860 + SO0801 0.47 -0.1
813,862 - SO0801 0.47 -0.1
813,915 + SO0801 0.53 +0.6
814,028 + SO0801 0.66 +0.4
814,211 + SO0801 0.86 -0.0
814,211 + SO0801 0.86 +0.1
814,249 + SO0801 0.90 -0.4
814,249 + SO0801 0.90 +0.6
814,249 + SO0801 0.90 +0.2
814,257 - +0.3
814,309 + +0.1
814,430 - -0.2
814,506 - +0.2
814,506 - +0.6
814,550 + +0.6
814,552 - +0.2
814,582 - -0.2
814,594 - +0.2
814,651 + -0.5
814,683 + +0.3
814,691 - -0.1
814,691 - +0.1
814,691 - +0.4
814,691 - -0.8
814,711 - +0.4
814,713 - +1.0
814,721 + +0.3
814,737 + +0.1
814,857 - SO0802 0.12 +0.4
814,899 + SO0802 0.15 -2.3
814,908 + SO0802 0.16 -0.4
814,908 + SO0802 0.16 +0.1
814,914 - SO0802 0.16 +0.1
814,930 - SO0802 0.17 -0.2
814,942 + SO0802 0.18 -1.1
814,942 + SO0802 0.18 -0.0
814,942 + SO0802 0.18 +0.5
814,989 + SO0802 0.22 -1.2
815,059 + SO0802 0.27 +0.5
815,060 + SO0802 0.27 -1.0
815,060 + SO0802 0.27 -0.1
815,087 - SO0802 0.29 -1.0
815,132 - SO0802 0.32 -0.4
815,176 + SO0802 0.36 -0.6
815,176 + SO0802 0.36 -0.2
815,199 - SO0802 0.37 -0.2
815,210 - SO0802 0.38 -1.2
815,210 - SO0802 0.38 +0.2
815,244 + SO0802 0.41 +0.2
815,284 + SO0802 0.43 +0.0
815,303 + SO0802 0.45 +0.7
815,369 + SO0802 0.50 -0.8
815,377 - SO0802 0.50 -0.4
815,384 + SO0802 0.51 -0.5
815,444 - SO0802 0.55 -0.8
815,486 + SO0802 0.58 -0.1
815,498 + SO0802 0.59 -0.3
815,498 + SO0802 0.59 -0.9
815,506 - SO0802 0.60 -0.1
815,506 - SO0802 0.60 +0.5
815,506 - SO0802 0.60 -0.2
815,506 - SO0802 0.60 +0.6
815,508 + SO0802 0.60 -0.3
815,508 + SO0802 0.60 -0.4
815,508 + SO0802 0.60 -0.2
815,508 + SO0802 0.60 +0.1
815,579 + SO0802 0.65 -0.4
815,619 - SO0802 0.68 +0.0
815,717 - SO0802 0.75 -0.2
815,749 - SO0802 0.78 +0.0
815,865 - SO0802 0.86 +0.3
815,881 + SO0802 0.87 -0.4
815,923 - +0.4
815,931 - +0.7
816,410 - SO0804 0.10 +0.3
816,479 + SO0804 0.22 +1.2
816,490 + SO0804 0.24 -0.2
816,601 - SO0804 0.42 +0.2
816,643 - SO0804 0.49 +1.1
816,685 - SO0804 0.56 -0.2
816,694 - SO0804 0.57 +0.3
816,814 + SO0804 0.77 -0.1
816,893 + +0.1
816,893 + -0.9
816,893 + +0.7
816,893 + +0.1
816,901 - -0.7
816,901 - -0.4
816,901 - -0.2
816,901 - +0.3
816,901 - +0.2
816,901 - +0.3
816,901 - -0.4
816,986 + -0.3
816,986 + +0.0
816,994 - +0.0
817,022 + +0.1
817,029 + -0.3
817,030 - +0.2

Or see this region's nucleotide sequence