Experiment: Fumarate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_814 and HP15_815 are separated by 9 nucleotides HP15_815 and HP15_816 overlap by 8 nucleotides HP15_816 and HP15_817 are separated by 7 nucleotides HP15_817 and HP15_818 are separated by 256 nucleotides
HP15_814: HP15_814 - aspartate aminotransferase, at 833,311 to 834,561
_814
HP15_815: HP15_815 - uncharacterized conserved protein UCP037225-like protein, at 834,571 to 834,762
_815
HP15_816: HP15_816 - secreted protein containing DUF1439, at 834,755 to 835,327
_816
HP15_817: HP15_817 - 3-isopropylmalate dehydrogenase, at 835,335 to 836,489
_817
HP15_818: HP15_818 - protein containing diguanylate phosphodiesterase, predicted domains, at 836,746 to 837,453
_818
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.369 kb on + strand, within HP15_814 at 834.389 kb on + strand, within HP15_814 at 834.389 kb on + strand, within HP15_814 at 834.397 kb on - strand, within HP15_814 at 834.402 kb on - strand, within HP15_814 at 834.528 kb on + strand at 834.563 kb on - strand at 834.602 kb on - strand, within HP15_815 at 834.934 kb on + strand, within HP15_816 at 834.951 kb on + strand, within HP15_816 at 834.963 kb on + strand, within HP15_816 at 835.045 kb on - strand, within HP15_816 at 835.057 kb on + strand, within HP15_816 at 835.065 kb on - strand, within HP15_816 at 835.119 kb on - strand, within HP15_816 at 835.139 kb on - strand, within HP15_816 at 835.166 kb on + strand, within HP15_816 at 835.431 kb on - strand at 835.511 kb on - strand, within HP15_817 at 835.612 kb on - strand, within HP15_817 at 835.616 kb on - strand, within HP15_817 at 835.702 kb on + strand, within HP15_817 at 835.846 kb on + strand, within HP15_817 at 836.174 kb on - strand, within HP15_817 at 836.266 kb on + strand, within HP15_817 at 836.305 kb on - strand, within HP15_817 at 836.405 kb on - strand at 836.459 kb on + strand at 836.467 kb on - strand at 836.493 kb on + strand at 836.808 kb on + strand at 836.943 kb on - strand, within HP15_818 at 836.992 kb on + strand, within HP15_818 at 836.993 kb on - strand, within HP15_818 at 837.030 kb on + strand, within HP15_818 at 837.090 kb on - strand, within HP15_818 at 837.136 kb on - strand, within HP15_818 at 837.209 kb on - strand, within HP15_818 at 837.243 kb on - strand, within HP15_818 at 837.321 kb on + strand, within HP15_818 at 837.393 kb on + strand at 837.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate remove 834,369 + HP15_814 0.85 -0.4 834,389 + HP15_814 0.86 +1.1 834,389 + HP15_814 0.86 +1.4 834,397 - HP15_814 0.87 +0.2 834,402 - HP15_814 0.87 +1.5 834,528 + -0.7 834,563 - -0.6 834,602 - HP15_815 0.16 -0.1 834,934 + HP15_816 0.31 +1.3 834,951 + HP15_816 0.34 +0.9 834,963 + HP15_816 0.36 +0.9 835,045 - HP15_816 0.51 +0.3 835,057 + HP15_816 0.53 -0.2 835,065 - HP15_816 0.54 -0.5 835,119 - HP15_816 0.64 -0.7 835,139 - HP15_816 0.67 -0.8 835,166 + HP15_816 0.72 +1.3 835,431 - -1.1 835,511 - HP15_817 0.15 +0.7 835,612 - HP15_817 0.24 -1.0 835,616 - HP15_817 0.24 -0.5 835,702 + HP15_817 0.32 -3.1 835,846 + HP15_817 0.44 -2.6 836,174 - HP15_817 0.73 -0.5 836,266 + HP15_817 0.81 -0.4 836,305 - HP15_817 0.84 +1.0 836,405 - +1.2 836,459 + -0.3 836,467 - +0.0 836,493 + -1.0 836,808 + +0.2 836,943 - HP15_818 0.28 -0.1 836,992 + HP15_818 0.35 +0.1 836,993 - HP15_818 0.35 -0.2 837,030 + HP15_818 0.40 -0.3 837,090 - HP15_818 0.49 -0.9 837,136 - HP15_818 0.55 -0.6 837,209 - HP15_818 0.65 +1.5 837,243 - HP15_818 0.70 -0.4 837,321 + HP15_818 0.81 -0.7 837,393 + +0.2 837,481 - -0.1
Or see this region's nucleotide sequence