Experiment: Fumarate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_480 and HP15_481 are separated by 55 nucleotides HP15_481 and HP15_482 are separated by 211 nucleotides
HP15_480: HP15_480 - 3-dehydroquinate synthase, at 490,964 to 492,058
_480
HP15_481: HP15_481 - sporulation domain protein, at 492,114 to 493,601
_481
HP15_482: HP15_482 - glutamate synthase subunit alpha, at 493,813 to 498,261
_482
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.064 kb on + strand at 492.150 kb on + strand at 492.171 kb on - strand at 492.296 kb on - strand, within HP15_481 at 492.390 kb on + strand, within HP15_481 at 492.416 kb on - strand, within HP15_481 at 492.504 kb on - strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.585 kb on - strand, within HP15_481 at 492.585 kb on - strand, within HP15_481 at 492.666 kb on + strand, within HP15_481 at 492.688 kb on - strand, within HP15_481 at 492.783 kb on + strand, within HP15_481 at 492.827 kb on + strand, within HP15_481 at 492.842 kb on + strand, within HP15_481 at 492.884 kb on - strand, within HP15_481 at 493.111 kb on - strand, within HP15_481 at 493.169 kb on + strand, within HP15_481 at 493.177 kb on - strand, within HP15_481 at 493.359 kb on + strand, within HP15_481 at 493.401 kb on - strand, within HP15_481 at 493.401 kb on - strand, within HP15_481 at 493.403 kb on - strand, within HP15_481 at 493.429 kb on + strand, within HP15_481 at 493.437 kb on - strand, within HP15_481 at 493.456 kb on - strand at 493.456 kb on - strand at 493.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate remove 492,064 + +0.5 492,150 + +0.0 492,171 - -0.8 492,296 - HP15_481 0.12 +0.4 492,390 + HP15_481 0.19 -0.7 492,416 - HP15_481 0.20 -0.7 492,504 - HP15_481 0.26 -0.4 492,577 + HP15_481 0.31 +1.0 492,577 + HP15_481 0.31 -1.6 492,577 + HP15_481 0.31 +0.7 492,577 + HP15_481 0.31 -1.0 492,577 + HP15_481 0.31 -0.3 492,577 + HP15_481 0.31 -0.2 492,577 + HP15_481 0.31 -0.3 492,585 - HP15_481 0.32 -0.9 492,585 - HP15_481 0.32 +0.2 492,666 + HP15_481 0.37 +0.9 492,688 - HP15_481 0.39 -0.9 492,783 + HP15_481 0.45 +0.7 492,827 + HP15_481 0.48 -0.3 492,842 + HP15_481 0.49 -1.9 492,884 - HP15_481 0.52 +1.0 493,111 - HP15_481 0.67 +0.7 493,169 + HP15_481 0.71 +0.6 493,177 - HP15_481 0.71 +1.9 493,359 + HP15_481 0.84 +0.3 493,401 - HP15_481 0.86 +1.5 493,401 - HP15_481 0.86 +0.1 493,403 - HP15_481 0.87 -0.3 493,429 + HP15_481 0.88 -0.7 493,437 - HP15_481 0.89 -0.5 493,456 - +1.3 493,456 - +1.2 493,572 + +0.0
Or see this region's nucleotide sequence