Strain Fitness in Marinobacter adhaerens HP15 around HP15_35

Experiment: Fumarate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_33 and HP15_34 are separated by 137 nucleotidesHP15_34 and HP15_35 are separated by 2 nucleotidesHP15_35 and HP15_36 are separated by 2 nucleotidesHP15_36 and HP15_37 are separated by 382 nucleotides HP15_33: HP15_33 - fumarylacetoacetate (FAA) hydrolase, at 37,779 to 38,681 _33 HP15_34: HP15_34 - transcriptional regulator, IclR family, at 38,819 to 39,613 _34 HP15_35: HP15_35 - thiolase, at 39,616 to 40,806 _35 HP15_36: HP15_36 - protein containing DUF35, at 40,809 to 40,964 _36 HP15_37: HP15_37 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 41,347 to 42,048 _37 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.721 kb on + strandat 38.726 kb on + strandat 39.007 kb on - strand, within HP15_34at 39.027 kb on - strand, within HP15_34at 39.043 kb on + strand, within HP15_34at 39.043 kb on + strand, within HP15_34at 39.063 kb on + strand, within HP15_34at 39.071 kb on - strand, within HP15_34at 39.071 kb on - strand, within HP15_34at 39.078 kb on + strand, within HP15_34at 39.086 kb on - strand, within HP15_34at 39.165 kb on + strand, within HP15_34at 39.173 kb on - strand, within HP15_34at 39.173 kb on - strand, within HP15_34at 39.175 kb on - strand, within HP15_34at 39.211 kb on - strand, within HP15_34at 39.228 kb on + strand, within HP15_34at 39.331 kb on + strand, within HP15_34at 39.339 kb on - strand, within HP15_34at 39.552 kb on + strandat 39.595 kb on + strandat 39.607 kb on + strandat 39.615 kb on - strandat 39.684 kb on + strandat 39.692 kb on - strandat 39.700 kb on + strandat 39.752 kb on - strand, within HP15_35at 39.808 kb on + strand, within HP15_35at 39.873 kb on - strand, within HP15_35at 39.876 kb on + strand, within HP15_35at 39.943 kb on + strand, within HP15_35at 40.001 kb on + strand, within HP15_35at 40.014 kb on - strand, within HP15_35at 40.035 kb on + strand, within HP15_35at 40.078 kb on + strand, within HP15_35at 40.084 kb on + strand, within HP15_35at 40.086 kb on - strand, within HP15_35at 40.086 kb on - strand, within HP15_35at 40.165 kb on - strand, within HP15_35at 40.178 kb on - strand, within HP15_35at 40.178 kb on - strand, within HP15_35at 40.217 kb on + strand, within HP15_35at 40.231 kb on - strand, within HP15_35at 40.231 kb on - strand, within HP15_35at 40.335 kb on - strand, within HP15_35at 40.353 kb on - strand, within HP15_35at 40.407 kb on + strand, within HP15_35at 40.415 kb on - strand, within HP15_35at 40.443 kb on + strand, within HP15_35at 40.537 kb on + strand, within HP15_35at 40.537 kb on + strand, within HP15_35at 40.577 kb on + strand, within HP15_35at 40.577 kb on - strand, within HP15_35at 40.584 kb on + strand, within HP15_35at 40.587 kb on - strand, within HP15_35at 40.677 kb on - strand, within HP15_35at 40.771 kb on - strandat 40.815 kb on - strandat 40.832 kb on + strand, within HP15_36at 40.903 kb on + strand, within HP15_36at 40.987 kb on - strandat 40.987 kb on - strandat 40.987 kb on - strandat 40.995 kb on - strandat 41.084 kb on + strandat 41.115 kb on - strandat 41.322 kb on + strandat 41.535 kb on - strand, within HP15_37at 41.551 kb on + strand, within HP15_37at 41.626 kb on - strand, within HP15_37at 41.645 kb on - strand, within HP15_37at 41.712 kb on + strand, within HP15_37at 41.752 kb on - strand, within HP15_37at 41.779 kb on + strand, within HP15_37at 41.779 kb on + strand, within HP15_37

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate
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38,721 + +1.6
38,726 + -0.0
39,007 - HP15_34 0.24 -0.2
39,027 - HP15_34 0.26 -0.1
39,043 + HP15_34 0.28 +0.1
39,043 + HP15_34 0.28 +0.1
39,063 + HP15_34 0.31 -0.3
39,071 - HP15_34 0.32 +0.6
39,071 - HP15_34 0.32 +1.1
39,078 + HP15_34 0.33 +0.7
39,086 - HP15_34 0.34 -0.4
39,165 + HP15_34 0.44 -0.9
39,173 - HP15_34 0.45 -1.3
39,173 - HP15_34 0.45 -1.9
39,175 - HP15_34 0.45 +1.4
39,211 - HP15_34 0.49 -0.0
39,228 + HP15_34 0.51 -0.1
39,331 + HP15_34 0.64 +1.8
39,339 - HP15_34 0.65 -0.1
39,552 + +0.4
39,595 + -0.6
39,607 + -1.0
39,615 - +1.4
39,684 + +0.6
39,692 - -1.2
39,700 + -0.6
39,752 - HP15_35 0.11 -1.0
39,808 + HP15_35 0.16 -0.5
39,873 - HP15_35 0.22 -0.3
39,876 + HP15_35 0.22 +0.6
39,943 + HP15_35 0.27 +1.8
40,001 + HP15_35 0.32 -0.0
40,014 - HP15_35 0.33 -0.1
40,035 + HP15_35 0.35 -0.8
40,078 + HP15_35 0.39 -0.4
40,084 + HP15_35 0.39 -0.2
40,086 - HP15_35 0.39 -0.3
40,086 - HP15_35 0.39 -0.7
40,165 - HP15_35 0.46 -1.1
40,178 - HP15_35 0.47 +1.7
40,178 - HP15_35 0.47 -0.4
40,217 + HP15_35 0.50 +0.2
40,231 - HP15_35 0.52 -0.3
40,231 - HP15_35 0.52 -1.4
40,335 - HP15_35 0.60 -0.5
40,353 - HP15_35 0.62 -0.4
40,407 + HP15_35 0.66 -0.4
40,415 - HP15_35 0.67 +0.8
40,443 + HP15_35 0.69 +0.9
40,537 + HP15_35 0.77 -1.3
40,537 + HP15_35 0.77 +0.9
40,577 + HP15_35 0.81 +1.3
40,577 - HP15_35 0.81 -0.8
40,584 + HP15_35 0.81 -0.8
40,587 - HP15_35 0.82 -1.3
40,677 - HP15_35 0.89 -0.0
40,771 - -1.7
40,815 - -0.6
40,832 + HP15_36 0.15 -0.5
40,903 + HP15_36 0.60 +1.0
40,987 - -0.9
40,987 - +1.6
40,987 - +0.9
40,995 - +0.5
41,084 + +1.4
41,115 - -0.4
41,322 + -0.8
41,535 - HP15_37 0.27 +0.7
41,551 + HP15_37 0.29 -0.2
41,626 - HP15_37 0.40 +1.0
41,645 - HP15_37 0.42 +0.9
41,712 + HP15_37 0.52 +1.3
41,752 - HP15_37 0.58 -0.4
41,779 + HP15_37 0.62 +0.9
41,779 + HP15_37 0.62 +0.1

Or see this region's nucleotide sequence