Experiment: Fumarate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3321 and HP15_3322 are separated by 228 nucleotides HP15_3322 and HP15_3323 are separated by 11 nucleotides HP15_3323 and HP15_3324 are separated by 64 nucleotides
HP15_3321: HP15_3321 - DNA repair protein RadC-like protein, at 3,483,263 to 3,483,937
_3321
HP15_3322: HP15_3322 - ribosomal protein L28, at 3,484,166 to 3,484,402
_3322
HP15_3323: HP15_3323 - ribosomal protein L33, at 3,484,414 to 3,484,569
_3323
HP15_3324: HP15_3324 - endonuclease/exonuclease/phosphatase, at 3,484,634 to 3,485,494
_3324
Position (kb)
3484
3485 Strain fitness (log2 ratio)
-1
0
1 at 3483.331 kb on - strand, within HP15_3321 at 3483.406 kb on + strand, within HP15_3321 at 3483.463 kb on + strand, within HP15_3321 at 3483.479 kb on + strand, within HP15_3321 at 3483.480 kb on - strand, within HP15_3321 at 3483.674 kb on - strand, within HP15_3321 at 3483.688 kb on + strand, within HP15_3321 at 3483.787 kb on + strand, within HP15_3321 at 3483.931 kb on + strand at 3484.640 kb on - strand at 3484.685 kb on - strand at 3484.731 kb on - strand, within HP15_3324 at 3484.800 kb on + strand, within HP15_3324 at 3484.920 kb on - strand, within HP15_3324 at 3485.070 kb on - strand, within HP15_3324 at 3485.206 kb on - strand, within HP15_3324 at 3485.389 kb on - strand, within HP15_3324
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate remove 3,483,331 - HP15_3321 0.10 +1.2 3,483,406 + HP15_3321 0.21 -1.1 3,483,463 + HP15_3321 0.30 +0.3 3,483,479 + HP15_3321 0.32 -0.7 3,483,480 - HP15_3321 0.32 +1.5 3,483,674 - HP15_3321 0.61 -1.5 3,483,688 + HP15_3321 0.63 -1.1 3,483,787 + HP15_3321 0.78 +0.5 3,483,931 + +0.1 3,484,640 - +1.5 3,484,685 - -0.9 3,484,731 - HP15_3324 0.11 -0.9 3,484,800 + HP15_3324 0.19 +1.6 3,484,920 - HP15_3324 0.33 +0.3 3,485,070 - HP15_3324 0.51 +1.7 3,485,206 - HP15_3324 0.66 +1.4 3,485,389 - HP15_3324 0.88 +0.8
Or see this region's nucleotide sequence