Experiment: Fumarate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2721 and HP15_2722 are separated by 105 nucleotides HP15_2722 and HP15_2723 are separated by 326 nucleotides HP15_2723 and HP15_2724 are separated by 74 nucleotides
HP15_2721: HP15_2721 - ribosome-associated GTPase, at 2,874,279 to 2,875,328
_2721
HP15_2722: HP15_2722 - polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, at 2,875,434 to 2,876,081
_2722
HP15_2723: HP15_2723 - thioredoxin, at 2,876,408 to 2,876,791
_2723
HP15_2724: HP15_2724 - short-chain dehydrogenase/reductase SDR, at 2,876,866 to 2,877,726
_2724
Position (kb)
2875
2876
2877 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2874.546 kb on + strand, within HP15_2721 at 2874.637 kb on - strand, within HP15_2721 at 2874.682 kb on + strand, within HP15_2721 at 2874.712 kb on + strand, within HP15_2721 at 2874.762 kb on - strand, within HP15_2721 at 2874.800 kb on + strand, within HP15_2721 at 2874.836 kb on + strand, within HP15_2721 at 2874.943 kb on - strand, within HP15_2721 at 2874.998 kb on + strand, within HP15_2721 at 2875.054 kb on - strand, within HP15_2721 at 2875.120 kb on - strand, within HP15_2721 at 2875.158 kb on + strand, within HP15_2721 at 2875.234 kb on - strand at 2875.301 kb on + strand at 2875.309 kb on - strand at 2875.390 kb on + strand at 2875.603 kb on + strand, within HP15_2722 at 2875.603 kb on + strand, within HP15_2722 at 2875.611 kb on - strand, within HP15_2722 at 2875.613 kb on - strand, within HP15_2722 at 2875.696 kb on - strand, within HP15_2722 at 2875.783 kb on + strand, within HP15_2722 at 2875.835 kb on + strand, within HP15_2722 at 2875.845 kb on + strand, within HP15_2722 at 2875.845 kb on + strand, within HP15_2722 at 2875.848 kb on - strand, within HP15_2722 at 2875.856 kb on + strand, within HP15_2722 at 2875.856 kb on + strand, within HP15_2722 at 2875.864 kb on - strand, within HP15_2722 at 2875.936 kb on + strand, within HP15_2722 at 2875.941 kb on + strand, within HP15_2722 at 2875.994 kb on - strand, within HP15_2722 at 2876.146 kb on - strand at 2876.331 kb on + strand at 2876.418 kb on + strand at 2876.418 kb on + strand at 2876.426 kb on - strand at 2876.473 kb on - strand, within HP15_2723 at 2876.544 kb on + strand, within HP15_2723 at 2876.551 kb on - strand, within HP15_2723 at 2876.552 kb on - strand, within HP15_2723 at 2876.594 kb on + strand, within HP15_2723 at 2876.594 kb on + strand, within HP15_2723 at 2876.642 kb on + strand, within HP15_2723 at 2876.646 kb on - strand, within HP15_2723 at 2876.695 kb on - strand, within HP15_2723 at 2876.705 kb on + strand, within HP15_2723 at 2876.865 kb on - strand at 2876.884 kb on + strand at 2877.012 kb on - strand, within HP15_2724
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate remove 2,874,546 + HP15_2721 0.25 +0.5 2,874,637 - HP15_2721 0.34 +1.3 2,874,682 + HP15_2721 0.38 -0.4 2,874,712 + HP15_2721 0.41 +0.2 2,874,762 - HP15_2721 0.46 -0.2 2,874,800 + HP15_2721 0.50 -0.2 2,874,836 + HP15_2721 0.53 -0.1 2,874,943 - HP15_2721 0.63 -0.1 2,874,998 + HP15_2721 0.68 -0.9 2,875,054 - HP15_2721 0.74 -0.3 2,875,120 - HP15_2721 0.80 -0.4 2,875,158 + HP15_2721 0.84 -0.4 2,875,234 - -0.6 2,875,301 + +1.5 2,875,309 - -0.1 2,875,390 + +0.0 2,875,603 + HP15_2722 0.26 +1.2 2,875,603 + HP15_2722 0.26 -0.2 2,875,611 - HP15_2722 0.27 +1.4 2,875,613 - HP15_2722 0.28 +2.1 2,875,696 - HP15_2722 0.40 +1.5 2,875,783 + HP15_2722 0.54 +0.5 2,875,835 + HP15_2722 0.62 +1.3 2,875,845 + HP15_2722 0.63 +1.8 2,875,845 + HP15_2722 0.63 +1.1 2,875,848 - HP15_2722 0.64 -0.1 2,875,856 + HP15_2722 0.65 -0.3 2,875,856 + HP15_2722 0.65 +0.6 2,875,864 - HP15_2722 0.66 -0.2 2,875,936 + HP15_2722 0.77 +1.4 2,875,941 + HP15_2722 0.78 -0.4 2,875,994 - HP15_2722 0.86 +1.8 2,876,146 - -2.3 2,876,331 + +1.2 2,876,418 + +1.0 2,876,418 + -0.5 2,876,426 - +1.5 2,876,473 - HP15_2723 0.17 -0.6 2,876,544 + HP15_2723 0.35 +1.5 2,876,551 - HP15_2723 0.37 -0.9 2,876,552 - HP15_2723 0.38 +1.2 2,876,594 + HP15_2723 0.48 -0.6 2,876,594 + HP15_2723 0.48 -0.4 2,876,642 + HP15_2723 0.61 +1.3 2,876,646 - HP15_2723 0.62 +1.9 2,876,695 - HP15_2723 0.75 +0.3 2,876,705 + HP15_2723 0.77 +1.1 2,876,865 - +0.4 2,876,884 + +0.1 2,877,012 - HP15_2724 0.17 -1.2
Or see this region's nucleotide sequence