Strain Fitness in Marinobacter adhaerens HP15 around HP15_2722

Experiment: Fumarate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2721 and HP15_2722 are separated by 105 nucleotidesHP15_2722 and HP15_2723 are separated by 326 nucleotidesHP15_2723 and HP15_2724 are separated by 74 nucleotides HP15_2721: HP15_2721 - ribosome-associated GTPase, at 2,874,279 to 2,875,328 _2721 HP15_2722: HP15_2722 - polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, at 2,875,434 to 2,876,081 _2722 HP15_2723: HP15_2723 - thioredoxin, at 2,876,408 to 2,876,791 _2723 HP15_2724: HP15_2724 - short-chain dehydrogenase/reductase SDR, at 2,876,866 to 2,877,726 _2724 Position (kb) 2875 2876 2877Strain fitness (log2 ratio) -2 -1 0 1 2at 2874.546 kb on + strand, within HP15_2721at 2874.637 kb on - strand, within HP15_2721at 2874.682 kb on + strand, within HP15_2721at 2874.712 kb on + strand, within HP15_2721at 2874.762 kb on - strand, within HP15_2721at 2874.800 kb on + strand, within HP15_2721at 2874.836 kb on + strand, within HP15_2721at 2874.943 kb on - strand, within HP15_2721at 2874.998 kb on + strand, within HP15_2721at 2875.054 kb on - strand, within HP15_2721at 2875.120 kb on - strand, within HP15_2721at 2875.158 kb on + strand, within HP15_2721at 2875.234 kb on - strandat 2875.301 kb on + strandat 2875.309 kb on - strandat 2875.390 kb on + strandat 2875.603 kb on + strand, within HP15_2722at 2875.603 kb on + strand, within HP15_2722at 2875.611 kb on - strand, within HP15_2722at 2875.613 kb on - strand, within HP15_2722at 2875.696 kb on - strand, within HP15_2722at 2875.783 kb on + strand, within HP15_2722at 2875.835 kb on + strand, within HP15_2722at 2875.845 kb on + strand, within HP15_2722at 2875.845 kb on + strand, within HP15_2722at 2875.848 kb on - strand, within HP15_2722at 2875.856 kb on + strand, within HP15_2722at 2875.856 kb on + strand, within HP15_2722at 2875.864 kb on - strand, within HP15_2722at 2875.936 kb on + strand, within HP15_2722at 2875.941 kb on + strand, within HP15_2722at 2875.994 kb on - strand, within HP15_2722at 2876.146 kb on - strandat 2876.331 kb on + strandat 2876.418 kb on + strandat 2876.418 kb on + strandat 2876.426 kb on - strandat 2876.473 kb on - strand, within HP15_2723at 2876.544 kb on + strand, within HP15_2723at 2876.551 kb on - strand, within HP15_2723at 2876.552 kb on - strand, within HP15_2723at 2876.594 kb on + strand, within HP15_2723at 2876.594 kb on + strand, within HP15_2723at 2876.642 kb on + strand, within HP15_2723at 2876.646 kb on - strand, within HP15_2723at 2876.695 kb on - strand, within HP15_2723at 2876.705 kb on + strand, within HP15_2723at 2876.865 kb on - strandat 2876.884 kb on + strandat 2877.012 kb on - strand, within HP15_2724

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate
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2,874,546 + HP15_2721 0.25 +0.5
2,874,637 - HP15_2721 0.34 +1.3
2,874,682 + HP15_2721 0.38 -0.4
2,874,712 + HP15_2721 0.41 +0.2
2,874,762 - HP15_2721 0.46 -0.2
2,874,800 + HP15_2721 0.50 -0.2
2,874,836 + HP15_2721 0.53 -0.1
2,874,943 - HP15_2721 0.63 -0.1
2,874,998 + HP15_2721 0.68 -0.9
2,875,054 - HP15_2721 0.74 -0.3
2,875,120 - HP15_2721 0.80 -0.4
2,875,158 + HP15_2721 0.84 -0.4
2,875,234 - -0.6
2,875,301 + +1.5
2,875,309 - -0.1
2,875,390 + +0.0
2,875,603 + HP15_2722 0.26 +1.2
2,875,603 + HP15_2722 0.26 -0.2
2,875,611 - HP15_2722 0.27 +1.4
2,875,613 - HP15_2722 0.28 +2.1
2,875,696 - HP15_2722 0.40 +1.5
2,875,783 + HP15_2722 0.54 +0.5
2,875,835 + HP15_2722 0.62 +1.3
2,875,845 + HP15_2722 0.63 +1.8
2,875,845 + HP15_2722 0.63 +1.1
2,875,848 - HP15_2722 0.64 -0.1
2,875,856 + HP15_2722 0.65 -0.3
2,875,856 + HP15_2722 0.65 +0.6
2,875,864 - HP15_2722 0.66 -0.2
2,875,936 + HP15_2722 0.77 +1.4
2,875,941 + HP15_2722 0.78 -0.4
2,875,994 - HP15_2722 0.86 +1.8
2,876,146 - -2.3
2,876,331 + +1.2
2,876,418 + +1.0
2,876,418 + -0.5
2,876,426 - +1.5
2,876,473 - HP15_2723 0.17 -0.6
2,876,544 + HP15_2723 0.35 +1.5
2,876,551 - HP15_2723 0.37 -0.9
2,876,552 - HP15_2723 0.38 +1.2
2,876,594 + HP15_2723 0.48 -0.6
2,876,594 + HP15_2723 0.48 -0.4
2,876,642 + HP15_2723 0.61 +1.3
2,876,646 - HP15_2723 0.62 +1.9
2,876,695 - HP15_2723 0.75 +0.3
2,876,705 + HP15_2723 0.77 +1.1
2,876,865 - +0.4
2,876,884 + +0.1
2,877,012 - HP15_2724 0.17 -1.2

Or see this region's nucleotide sequence