Experiment: Fumarate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2576 and HP15_2577 are separated by 114 nucleotides HP15_2577 and HP15_2578 are separated by 110 nucleotides HP15_2578 and HP15_2579 are separated by 15 nucleotides
HP15_2576: HP15_2576 - acyl-CoA dehydrogenase domain protein, at 2,724,069 to 2,725,871
_2576
HP15_2577: HP15_2577 - protein containing helix-turn-helix, AraC domain, at 2,725,986 to 2,726,981
_2577
HP15_2578: HP15_2578 - conserved hypothetical protein, at 2,727,092 to 2,727,256
_2578
HP15_2579: HP15_2579 - hemolysin, at 2,727,272 to 2,728,294
_2579
Position (kb)
2725
2726
2727 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2725.060 kb on - strand, within HP15_2576 at 2725.078 kb on + strand, within HP15_2576 at 2725.142 kb on - strand, within HP15_2576 at 2725.238 kb on - strand, within HP15_2576 at 2725.297 kb on + strand, within HP15_2576 at 2725.305 kb on - strand, within HP15_2576 at 2725.305 kb on - strand, within HP15_2576 at 2725.366 kb on + strand, within HP15_2576 at 2725.382 kb on + strand, within HP15_2576 at 2725.418 kb on - strand, within HP15_2576 at 2725.512 kb on - strand, within HP15_2576 at 2725.520 kb on - strand, within HP15_2576 at 2725.577 kb on + strand, within HP15_2576 at 2725.633 kb on + strand, within HP15_2576 at 2725.708 kb on - strand at 2725.709 kb on - strand at 2725.874 kb on - strand at 2726.027 kb on - strand at 2726.032 kb on - strand at 2726.419 kb on + strand, within HP15_2577 at 2726.512 kb on + strand, within HP15_2577 at 2726.529 kb on - strand, within HP15_2577 at 2726.534 kb on - strand, within HP15_2577 at 2726.679 kb on + strand, within HP15_2577 at 2726.738 kb on + strand, within HP15_2577 at 2726.799 kb on + strand, within HP15_2577 at 2726.942 kb on + strand at 2726.982 kb on + strand at 2726.992 kb on + strand at 2727.079 kb on + strand at 2727.108 kb on + strand at 2727.179 kb on - strand, within HP15_2578 at 2727.258 kb on - strand at 2727.261 kb on + strand at 2727.269 kb on + strand at 2727.308 kb on + strand at 2727.538 kb on - strand, within HP15_2579 at 2727.565 kb on - strand, within HP15_2579 at 2727.570 kb on - strand, within HP15_2579 at 2727.613 kb on + strand, within HP15_2579 at 2727.658 kb on - strand, within HP15_2579 at 2727.663 kb on - strand, within HP15_2579 at 2727.815 kb on - strand, within HP15_2579 at 2727.934 kb on + strand, within HP15_2579
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate remove 2,725,060 - HP15_2576 0.55 -0.1 2,725,078 + HP15_2576 0.56 +1.5 2,725,142 - HP15_2576 0.60 +2.2 2,725,238 - HP15_2576 0.65 +1.8 2,725,297 + HP15_2576 0.68 +0.5 2,725,305 - HP15_2576 0.69 -0.8 2,725,305 - HP15_2576 0.69 -0.1 2,725,366 + HP15_2576 0.72 -0.6 2,725,382 + HP15_2576 0.73 +1.3 2,725,418 - HP15_2576 0.75 +1.4 2,725,512 - HP15_2576 0.80 -0.7 2,725,520 - HP15_2576 0.80 +0.2 2,725,577 + HP15_2576 0.84 +1.0 2,725,633 + HP15_2576 0.87 -0.8 2,725,708 - -0.0 2,725,709 - +0.2 2,725,874 - -0.2 2,726,027 - +0.2 2,726,032 - -0.3 2,726,419 + HP15_2577 0.43 -0.2 2,726,512 + HP15_2577 0.53 -2.1 2,726,529 - HP15_2577 0.55 -0.1 2,726,534 - HP15_2577 0.55 -0.3 2,726,679 + HP15_2577 0.70 +1.4 2,726,738 + HP15_2577 0.76 -0.7 2,726,799 + HP15_2577 0.82 +0.2 2,726,942 + +0.1 2,726,982 + +2.3 2,726,992 + -0.4 2,727,079 + -0.5 2,727,108 + +1.2 2,727,179 - HP15_2578 0.53 +0.6 2,727,258 - -0.1 2,727,261 + +1.4 2,727,269 + -0.2 2,727,308 + -0.0 2,727,538 - HP15_2579 0.26 -0.6 2,727,565 - HP15_2579 0.29 -0.8 2,727,570 - HP15_2579 0.29 -0.6 2,727,613 + HP15_2579 0.33 -0.2 2,727,658 - HP15_2579 0.38 +0.8 2,727,663 - HP15_2579 0.38 -0.6 2,727,815 - HP15_2579 0.53 +0.4 2,727,934 + HP15_2579 0.65 -0.7
Or see this region's nucleotide sequence