Strain Fitness in Marinobacter adhaerens HP15 around HP15_1850

Experiment: Fumarate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1849 and HP15_1850 are separated by 158 nucleotidesHP15_1850 and HP15_1851 are separated by 326 nucleotides HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051 _1849 HP15_1850: HP15_1850 - conserved hypothetical protein, at 1,949,210 to 1,949,623 _1850 HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341 _1851 Position (kb) 1949 1950Strain fitness (log2 ratio) -2 -1 0 1at 1948.222 kb on + strandat 1948.250 kb on + strandat 1948.367 kb on - strand, within HP15_1849at 1948.378 kb on + strand, within HP15_1849at 1948.433 kb on - strand, within HP15_1849at 1948.601 kb on + strand, within HP15_1849at 1948.701 kb on + strand, within HP15_1849at 1948.734 kb on + strand, within HP15_1849at 1948.760 kb on + strand, within HP15_1849at 1948.869 kb on - strand, within HP15_1849at 1948.965 kb on + strand, within HP15_1849at 1948.973 kb on - strandat 1949.126 kb on + strandat 1949.134 kb on - strandat 1949.140 kb on - strandat 1949.283 kb on - strand, within HP15_1850at 1949.319 kb on + strand, within HP15_1850at 1949.429 kb on + strand, within HP15_1850at 1949.509 kb on + strand, within HP15_1850at 1949.517 kb on - strand, within HP15_1850at 1949.523 kb on + strand, within HP15_1850at 1949.671 kb on + strandat 1949.679 kb on - strandat 1949.965 kb on - strandat 1949.987 kb on + strandat 1949.994 kb on - strandat 1949.995 kb on - strandat 1950.153 kb on + strand, within HP15_1851at 1950.346 kb on + strand, within HP15_1851at 1950.354 kb on - strand, within HP15_1851at 1950.354 kb on - strand, within HP15_1851at 1950.361 kb on + strand, within HP15_1851at 1950.408 kb on - strand, within HP15_1851at 1950.439 kb on - strand, within HP15_1851at 1950.444 kb on - strand, within HP15_1851at 1950.476 kb on - strand, within HP15_1851

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate
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1,948,222 + -0.0
1,948,250 + +1.3
1,948,367 - HP15_1849 0.18 -0.6
1,948,378 + HP15_1849 0.19 +0.2
1,948,433 - HP15_1849 0.26 -0.3
1,948,601 + HP15_1849 0.46 -0.2
1,948,701 + HP15_1849 0.58 -2.1
1,948,734 + HP15_1849 0.62 -0.8
1,948,760 + HP15_1849 0.65 -0.3
1,948,869 - HP15_1849 0.78 +1.3
1,948,965 + HP15_1849 0.90 -0.4
1,948,973 - -0.7
1,949,126 + +1.3
1,949,134 - -0.2
1,949,140 - +1.0
1,949,283 - HP15_1850 0.18 +0.5
1,949,319 + HP15_1850 0.26 -0.0
1,949,429 + HP15_1850 0.53 +1.5
1,949,509 + HP15_1850 0.72 +0.3
1,949,517 - HP15_1850 0.74 +1.1
1,949,523 + HP15_1850 0.76 +1.3
1,949,671 + -0.8
1,949,679 - +0.5
1,949,965 - +0.0
1,949,987 + -0.1
1,949,994 - -0.6
1,949,995 - +0.1
1,950,153 + HP15_1851 0.15 +0.8
1,950,346 + HP15_1851 0.28 +1.3
1,950,354 - HP15_1851 0.29 +1.2
1,950,354 - HP15_1851 0.29 +0.1
1,950,361 + HP15_1851 0.30 +0.2
1,950,408 - HP15_1851 0.33 -0.9
1,950,439 - HP15_1851 0.35 -0.3
1,950,444 - HP15_1851 0.35 +1.5
1,950,476 - HP15_1851 0.38 -1.0

Or see this region's nucleotide sequence