Experiment: Fumarate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1849 and HP15_1850 are separated by 158 nucleotides HP15_1850 and HP15_1851 are separated by 326 nucleotides
HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051
_1849
HP15_1850: HP15_1850 - conserved hypothetical protein, at 1,949,210 to 1,949,623
_1850
HP15_1851: HP15_1851 - para-aminobenzoate synthase, subunit I, at 1,949,950 to 1,951,341
_1851
Position (kb)
1949
1950 Strain fitness (log2 ratio)
-2
-1
0
1 at 1948.222 kb on + strand at 1948.250 kb on + strand at 1948.367 kb on - strand, within HP15_1849 at 1948.378 kb on + strand, within HP15_1849 at 1948.433 kb on - strand, within HP15_1849 at 1948.601 kb on + strand, within HP15_1849 at 1948.701 kb on + strand, within HP15_1849 at 1948.734 kb on + strand, within HP15_1849 at 1948.760 kb on + strand, within HP15_1849 at 1948.869 kb on - strand, within HP15_1849 at 1948.965 kb on + strand, within HP15_1849 at 1948.973 kb on - strand at 1949.126 kb on + strand at 1949.134 kb on - strand at 1949.140 kb on - strand at 1949.283 kb on - strand, within HP15_1850 at 1949.319 kb on + strand, within HP15_1850 at 1949.429 kb on + strand, within HP15_1850 at 1949.509 kb on + strand, within HP15_1850 at 1949.517 kb on - strand, within HP15_1850 at 1949.523 kb on + strand, within HP15_1850 at 1949.671 kb on + strand at 1949.679 kb on - strand at 1949.965 kb on - strand at 1949.987 kb on + strand at 1949.994 kb on - strand at 1949.995 kb on - strand at 1950.153 kb on + strand, within HP15_1851 at 1950.346 kb on + strand, within HP15_1851 at 1950.354 kb on - strand, within HP15_1851 at 1950.354 kb on - strand, within HP15_1851 at 1950.361 kb on + strand, within HP15_1851 at 1950.408 kb on - strand, within HP15_1851 at 1950.439 kb on - strand, within HP15_1851 at 1950.444 kb on - strand, within HP15_1851 at 1950.476 kb on - strand, within HP15_1851
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate remove 1,948,222 + -0.0 1,948,250 + +1.3 1,948,367 - HP15_1849 0.18 -0.6 1,948,378 + HP15_1849 0.19 +0.2 1,948,433 - HP15_1849 0.26 -0.3 1,948,601 + HP15_1849 0.46 -0.2 1,948,701 + HP15_1849 0.58 -2.1 1,948,734 + HP15_1849 0.62 -0.8 1,948,760 + HP15_1849 0.65 -0.3 1,948,869 - HP15_1849 0.78 +1.3 1,948,965 + HP15_1849 0.90 -0.4 1,948,973 - -0.7 1,949,126 + +1.3 1,949,134 - -0.2 1,949,140 - +1.0 1,949,283 - HP15_1850 0.18 +0.5 1,949,319 + HP15_1850 0.26 -0.0 1,949,429 + HP15_1850 0.53 +1.5 1,949,509 + HP15_1850 0.72 +0.3 1,949,517 - HP15_1850 0.74 +1.1 1,949,523 + HP15_1850 0.76 +1.3 1,949,671 + -0.8 1,949,679 - +0.5 1,949,965 - +0.0 1,949,987 + -0.1 1,949,994 - -0.6 1,949,995 - +0.1 1,950,153 + HP15_1851 0.15 +0.8 1,950,346 + HP15_1851 0.28 +1.3 1,950,354 - HP15_1851 0.29 +1.2 1,950,354 - HP15_1851 0.29 +0.1 1,950,361 + HP15_1851 0.30 +0.2 1,950,408 - HP15_1851 0.33 -0.9 1,950,439 - HP15_1851 0.35 -0.3 1,950,444 - HP15_1851 0.35 +1.5 1,950,476 - HP15_1851 0.38 -1.0
Or see this region's nucleotide sequence