Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3944

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3943 and Shewana3_3944 are separated by 16 nucleotidesShewana3_3944 and Shewana3_3945 are separated by 58 nucleotidesShewana3_3945 and Shewana3_3946 are separated by 293 nucleotides Shewana3_3943: Shewana3_3943 - cell division protein FtsZ (RefSeq), at 4,740,699 to 4,741,901 _3943 Shewana3_3944: Shewana3_3944 - methyltransferase type 11 (RefSeq), at 4,741,918 to 4,742,556 _3944 Shewana3_3945: Shewana3_3945 - hypothetical protein (RefSeq), at 4,742,615 to 4,742,968 _3945 Shewana3_3946: Shewana3_3946 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 4,743,262 to 4,745,382 _3946 Position (kb) 4741 4742 4743Strain fitness (log2 ratio) -1 0 1at 4741.063 kb on + strand, within Shewana3_3943at 4741.590 kb on - strand, within Shewana3_3943at 4741.674 kb on - strand, within Shewana3_3943at 4741.716 kb on - strand, within Shewana3_3943at 4741.774 kb on + strand, within Shewana3_3943at 4741.780 kb on - strand, within Shewana3_3943at 4742.051 kb on + strand, within Shewana3_3944at 4742.051 kb on + strand, within Shewana3_3944at 4742.059 kb on - strand, within Shewana3_3944at 4742.076 kb on - strand, within Shewana3_3944at 4742.078 kb on + strand, within Shewana3_3944at 4742.109 kb on - strand, within Shewana3_3944at 4742.282 kb on + strand, within Shewana3_3944at 4742.461 kb on + strand, within Shewana3_3944at 4742.469 kb on - strand, within Shewana3_3944at 4742.541 kb on + strandat 4742.786 kb on + strand, within Shewana3_3945at 4742.791 kb on - strand, within Shewana3_3945at 4742.794 kb on - strand, within Shewana3_3945at 4742.866 kb on + strand, within Shewana3_3945at 4742.874 kb on - strand, within Shewana3_3945at 4742.912 kb on + strand, within Shewana3_3945at 4742.925 kb on - strand, within Shewana3_3945at 4742.943 kb on - strandat 4742.982 kb on - strandat 4743.296 kb on + strandat 4743.341 kb on - strandat 4743.369 kb on + strandat 4743.444 kb on - strandat 4743.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,741,063 + Shewana3_3943 0.30 -0.4
4,741,590 - Shewana3_3943 0.74 +0.1
4,741,674 - Shewana3_3943 0.81 -0.8
4,741,716 - Shewana3_3943 0.85 +0.6
4,741,774 + Shewana3_3943 0.89 +0.6
4,741,780 - Shewana3_3943 0.90 +0.2
4,742,051 + Shewana3_3944 0.21 +0.6
4,742,051 + Shewana3_3944 0.21 -1.0
4,742,059 - Shewana3_3944 0.22 -1.5
4,742,076 - Shewana3_3944 0.25 +0.2
4,742,078 + Shewana3_3944 0.25 -1.2
4,742,109 - Shewana3_3944 0.30 -1.0
4,742,282 + Shewana3_3944 0.57 +0.2
4,742,461 + Shewana3_3944 0.85 +0.2
4,742,469 - Shewana3_3944 0.86 -1.0
4,742,541 + +0.5
4,742,786 + Shewana3_3945 0.48 +0.2
4,742,791 - Shewana3_3945 0.50 -0.0
4,742,794 - Shewana3_3945 0.51 +0.6
4,742,866 + Shewana3_3945 0.71 +0.2
4,742,874 - Shewana3_3945 0.73 +1.1
4,742,912 + Shewana3_3945 0.84 +0.6
4,742,925 - Shewana3_3945 0.88 +0.5
4,742,943 - -0.5
4,742,982 - +0.4
4,743,296 + +0.4
4,743,341 - -0.5
4,743,369 + -0.7
4,743,444 - +0.3
4,743,454 + -0.3

Or see this region's nucleotide sequence