Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3721 and Shewana3_3722 are separated by 356 nucleotides Shewana3_3722 and Shewana3_3723 are separated by 317 nucleotides Shewana3_3723 and Shewana3_3724 are separated by 130 nucleotides
Shewana3_3721: Shewana3_3721 - phosphoesterase, PA-phosphatase related (RefSeq), at 4,464,772 to 4,465,284
_3721
Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895
_3722
Shewana3_3723: Shewana3_3723 - ribonuclease activity regulator protein RraA (RefSeq), at 4,466,213 to 4,466,698
_3723
Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881
_3724
Position (kb)
4466
4467 Strain fitness (log2 ratio)
-2
-1
0
1 at 4465.222 kb on - strand, within Shewana3_3721 at 4465.409 kb on - strand at 4465.414 kb on - strand at 4465.457 kb on + strand at 4465.457 kb on + strand at 4465.465 kb on - strand at 4465.770 kb on - strand, within Shewana3_3722 at 4465.897 kb on + strand at 4465.913 kb on - strand at 4466.108 kb on + strand at 4466.226 kb on + strand at 4466.226 kb on + strand at 4466.226 kb on + strand at 4466.234 kb on - strand at 4466.234 kb on - strand at 4466.339 kb on + strand, within Shewana3_3723 at 4466.348 kb on + strand, within Shewana3_3723 at 4466.624 kb on - strand, within Shewana3_3723 at 4466.688 kb on + strand at 4466.798 kb on + strand at 4466.876 kb on - strand at 4466.878 kb on + strand at 4466.878 kb on + strand at 4466.939 kb on + strand, within Shewana3_3724 at 4467.178 kb on + strand, within Shewana3_3724 at 4467.183 kb on + strand, within Shewana3_3724 at 4467.191 kb on - strand, within Shewana3_3724 at 4467.270 kb on - strand, within Shewana3_3724 at 4467.444 kb on + strand, within Shewana3_3724 at 4467.463 kb on + strand, within Shewana3_3724
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,465,222 - Shewana3_3721 0.88 +0.1 4,465,409 - -0.3 4,465,414 - +0.3 4,465,457 + +0.6 4,465,457 + +0.3 4,465,465 - +0.3 4,465,770 - Shewana3_3722 0.51 -0.1 4,465,897 + -0.0 4,465,913 - +0.4 4,466,108 + -1.2 4,466,226 + +0.5 4,466,226 + +0.3 4,466,226 + -0.1 4,466,234 - +0.2 4,466,234 - -0.0 4,466,339 + Shewana3_3723 0.26 -1.1 4,466,348 + Shewana3_3723 0.28 -1.2 4,466,624 - Shewana3_3723 0.85 -0.3 4,466,688 + +0.4 4,466,798 + +0.2 4,466,876 - -0.3 4,466,878 + +0.1 4,466,878 + -1.8 4,466,939 + Shewana3_3724 0.10 +0.3 4,467,178 + Shewana3_3724 0.33 -0.9 4,467,183 + Shewana3_3724 0.34 -1.6 4,467,191 - Shewana3_3724 0.34 -1.2 4,467,270 - Shewana3_3724 0.42 -2.2 4,467,444 + Shewana3_3724 0.58 -0.0 4,467,463 + Shewana3_3724 0.60 +0.2
Or see this region's nucleotide sequence