Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3723

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3721 and Shewana3_3722 are separated by 356 nucleotidesShewana3_3722 and Shewana3_3723 are separated by 317 nucleotidesShewana3_3723 and Shewana3_3724 are separated by 130 nucleotides Shewana3_3721: Shewana3_3721 - phosphoesterase, PA-phosphatase related (RefSeq), at 4,464,772 to 4,465,284 _3721 Shewana3_3722: Shewana3_3722 - uroporphyrinogen decarboxylase (RefSeq), at 4,465,641 to 4,465,895 _3722 Shewana3_3723: Shewana3_3723 - ribonuclease activity regulator protein RraA (RefSeq), at 4,466,213 to 4,466,698 _3723 Shewana3_3724: Shewana3_3724 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,466,829 to 4,467,881 _3724 Position (kb) 4466 4467Strain fitness (log2 ratio) -2 -1 0 1at 4465.222 kb on - strand, within Shewana3_3721at 4465.409 kb on - strandat 4465.414 kb on - strandat 4465.457 kb on + strandat 4465.457 kb on + strandat 4465.465 kb on - strandat 4465.770 kb on - strand, within Shewana3_3722at 4465.897 kb on + strandat 4465.913 kb on - strandat 4466.108 kb on + strandat 4466.226 kb on + strandat 4466.226 kb on + strandat 4466.226 kb on + strandat 4466.234 kb on - strandat 4466.234 kb on - strandat 4466.339 kb on + strand, within Shewana3_3723at 4466.348 kb on + strand, within Shewana3_3723at 4466.624 kb on - strand, within Shewana3_3723at 4466.688 kb on + strandat 4466.798 kb on + strandat 4466.876 kb on - strandat 4466.878 kb on + strandat 4466.878 kb on + strandat 4466.939 kb on + strand, within Shewana3_3724at 4467.178 kb on + strand, within Shewana3_3724at 4467.183 kb on + strand, within Shewana3_3724at 4467.191 kb on - strand, within Shewana3_3724at 4467.270 kb on - strand, within Shewana3_3724at 4467.444 kb on + strand, within Shewana3_3724at 4467.463 kb on + strand, within Shewana3_3724

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,465,222 - Shewana3_3721 0.88 +0.1
4,465,409 - -0.3
4,465,414 - +0.3
4,465,457 + +0.6
4,465,457 + +0.3
4,465,465 - +0.3
4,465,770 - Shewana3_3722 0.51 -0.1
4,465,897 + -0.0
4,465,913 - +0.4
4,466,108 + -1.2
4,466,226 + +0.5
4,466,226 + +0.3
4,466,226 + -0.1
4,466,234 - +0.2
4,466,234 - -0.0
4,466,339 + Shewana3_3723 0.26 -1.1
4,466,348 + Shewana3_3723 0.28 -1.2
4,466,624 - Shewana3_3723 0.85 -0.3
4,466,688 + +0.4
4,466,798 + +0.2
4,466,876 - -0.3
4,466,878 + +0.1
4,466,878 + -1.8
4,466,939 + Shewana3_3724 0.10 +0.3
4,467,178 + Shewana3_3724 0.33 -0.9
4,467,183 + Shewana3_3724 0.34 -1.6
4,467,191 - Shewana3_3724 0.34 -1.2
4,467,270 - Shewana3_3724 0.42 -2.2
4,467,444 + Shewana3_3724 0.58 -0.0
4,467,463 + Shewana3_3724 0.60 +0.2

Or see this region's nucleotide sequence