Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3571

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3570 and Shewana3_3571 are separated by 129 nucleotidesShewana3_3571 and Shewana3_3572 are separated by 3 nucleotides Shewana3_3570: Shewana3_3570 - LysR family transcriptional regulator (RefSeq), at 4,282,121 to 4,283,116 _3570 Shewana3_3571: Shewana3_3571 - RND family efflux transporter MFP subunit (RefSeq), at 4,283,246 to 4,284,328 _3571 Shewana3_3572: Shewana3_3572 - acriflavin resistance protein (RefSeq), at 4,284,332 to 4,287,415 _3572 Position (kb) 4283 4284 4285Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4282.408 kb on + strand, within Shewana3_3570at 4282.490 kb on - strand, within Shewana3_3570at 4282.587 kb on + strand, within Shewana3_3570at 4282.637 kb on + strand, within Shewana3_3570at 4282.662 kb on - strand, within Shewana3_3570at 4282.812 kb on - strand, within Shewana3_3570at 4283.332 kb on - strandat 4283.337 kb on + strandat 4283.437 kb on - strand, within Shewana3_3571at 4283.605 kb on + strand, within Shewana3_3571at 4283.605 kb on + strand, within Shewana3_3571at 4283.654 kb on - strand, within Shewana3_3571at 4283.656 kb on + strand, within Shewana3_3571at 4283.784 kb on - strand, within Shewana3_3571at 4283.856 kb on + strand, within Shewana3_3571at 4284.181 kb on - strand, within Shewana3_3571at 4284.193 kb on - strand, within Shewana3_3571at 4284.207 kb on + strand, within Shewana3_3571at 4284.207 kb on + strand, within Shewana3_3571at 4284.232 kb on - strandat 4284.296 kb on - strandat 4284.657 kb on - strand, within Shewana3_3572at 4284.659 kb on - strand, within Shewana3_3572at 4284.666 kb on + strand, within Shewana3_3572at 4284.723 kb on - strand, within Shewana3_3572at 4284.774 kb on - strand, within Shewana3_3572at 4284.843 kb on - strand, within Shewana3_3572at 4284.995 kb on - strand, within Shewana3_3572at 4285.043 kb on + strand, within Shewana3_3572at 4285.043 kb on + strand, within Shewana3_3572at 4285.051 kb on - strand, within Shewana3_3572at 4285.061 kb on + strand, within Shewana3_3572at 4285.083 kb on + strand, within Shewana3_3572at 4285.148 kb on - strand, within Shewana3_3572at 4285.328 kb on + strand, within Shewana3_3572

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,282,408 + Shewana3_3570 0.29 -1.5
4,282,490 - Shewana3_3570 0.37 -1.7
4,282,587 + Shewana3_3570 0.47 -2.1
4,282,637 + Shewana3_3570 0.52 -4.3
4,282,662 - Shewana3_3570 0.54 -1.4
4,282,812 - Shewana3_3570 0.69 -0.9
4,283,332 - +0.7
4,283,337 + -0.1
4,283,437 - Shewana3_3571 0.18 +0.3
4,283,605 + Shewana3_3571 0.33 -0.2
4,283,605 + Shewana3_3571 0.33 +0.2
4,283,654 - Shewana3_3571 0.38 +0.7
4,283,656 + Shewana3_3571 0.38 -0.8
4,283,784 - Shewana3_3571 0.50 -0.5
4,283,856 + Shewana3_3571 0.56 +0.4
4,284,181 - Shewana3_3571 0.86 +0.2
4,284,193 - Shewana3_3571 0.87 +0.6
4,284,207 + Shewana3_3571 0.89 -1.0
4,284,207 + Shewana3_3571 0.89 +0.8
4,284,232 - -0.1
4,284,296 - -0.9
4,284,657 - Shewana3_3572 0.11 -0.2
4,284,659 - Shewana3_3572 0.11 +0.2
4,284,666 + Shewana3_3572 0.11 +0.1
4,284,723 - Shewana3_3572 0.13 -2.7
4,284,774 - Shewana3_3572 0.14 +0.9
4,284,843 - Shewana3_3572 0.17 -0.0
4,284,995 - Shewana3_3572 0.21 -0.9
4,285,043 + Shewana3_3572 0.23 +0.3
4,285,043 + Shewana3_3572 0.23 -0.1
4,285,051 - Shewana3_3572 0.23 -0.3
4,285,061 + Shewana3_3572 0.24 +0.3
4,285,083 + Shewana3_3572 0.24 +0.3
4,285,148 - Shewana3_3572 0.26 -0.9
4,285,328 + Shewana3_3572 0.32 -3.3

Or see this region's nucleotide sequence