Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3531 and Shewana3_3532 are separated by 10 nucleotides Shewana3_3532 and Shewana3_3533 are separated by 309 nucleotides Shewana3_3533 and Shewana3_3534 are separated by 36 nucleotides Shewana3_3534 and Shewana3_3535 are separated by 93 nucleotides
Shewana3_3531: Shewana3_3531 - Rh family protein/ammonium transporter (RefSeq), at 4,231,191 to 4,232,441
_3531
Shewana3_3532: Shewana3_3532 - nitrogen regulatory protein P-II (RefSeq), at 4,232,452 to 4,232,790
_3532
Shewana3_3533: Shewana3_3533 - isochorismatase hydrolase (RefSeq), at 4,233,100 to 4,233,642
_3533
Shewana3_3534: Shewana3_3534 - hypothetical protein (RefSeq), at 4,233,679 to 4,234,413
_3534
Shewana3_3535: Shewana3_3535 - hypothetical protein (RefSeq), at 4,234,507 to 4,235,316
_3535
Position (kb) 4233
4234 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4232.307 kb on + strand, within Shewana3_3531 at 4232.307 kb on + strand, within Shewana3_3531 at 4232.315 kb on - strand, within Shewana3_3531 at 4232.315 kb on - strand, within Shewana3_3531 at 4232.317 kb on + strand at 4232.325 kb on - strand at 4232.325 kb on - strand at 4232.402 kb on + strand at 4232.411 kb on - strand at 4232.450 kb on + strand at 4232.507 kb on - strand, within Shewana3_3532 at 4232.694 kb on - strand, within Shewana3_3532 at 4232.783 kb on + strand at 4232.936 kb on + strand at 4232.942 kb on - strand at 4233.187 kb on - strand, within Shewana3_3533 at 4233.212 kb on - strand, within Shewana3_3533 at 4233.237 kb on + strand, within Shewana3_3533 at 4233.242 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.438 kb on - strand, within Shewana3_3533 at 4233.586 kb on - strand, within Shewana3_3533 at 4233.799 kb on - strand, within Shewana3_3534 at 4233.830 kb on + strand, within Shewana3_3534 at 4233.877 kb on - strand, within Shewana3_3534 at 4233.878 kb on - strand, within Shewana3_3534 at 4233.885 kb on + strand, within Shewana3_3534 at 4233.971 kb on + strand, within Shewana3_3534 at 4234.042 kb on + strand, within Shewana3_3534 at 4234.143 kb on + strand, within Shewana3_3534 at 4234.371 kb on + strand at 4234.490 kb on - strand at 4234.490 kb on - strand at 4234.622 kb on - strand, within Shewana3_3535
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,232,307 + Shewana3_3531 0.89 -0.4 4,232,307 + Shewana3_3531 0.89 +0.4 4,232,315 - Shewana3_3531 0.90 -0.5 4,232,315 - Shewana3_3531 0.90 -0.4 4,232,317 + -3.1 4,232,325 - -0.5 4,232,325 - -0.7 4,232,402 + -0.2 4,232,411 - -1.5 4,232,450 + -0.7 4,232,507 - Shewana3_3532 0.16 -0.7 4,232,694 - Shewana3_3532 0.71 -0.4 4,232,783 + -0.4 4,232,936 + -0.4 4,232,942 - -0.4 4,233,187 - Shewana3_3533 0.16 +0.4 4,233,212 - Shewana3_3533 0.21 +0.2 4,233,237 + Shewana3_3533 0.25 +0.9 4,233,242 + Shewana3_3533 0.26 +0.4 4,233,285 + Shewana3_3533 0.34 +0.3 4,233,285 + Shewana3_3533 0.34 -0.3 4,233,438 - Shewana3_3533 0.62 +0.0 4,233,586 - Shewana3_3533 0.90 -0.4 4,233,799 - Shewana3_3534 0.16 -1.0 4,233,830 + Shewana3_3534 0.21 +0.5 4,233,877 - Shewana3_3534 0.27 -0.8 4,233,878 - Shewana3_3534 0.27 -0.6 4,233,885 + Shewana3_3534 0.28 -0.9 4,233,971 + Shewana3_3534 0.40 +0.0 4,234,042 + Shewana3_3534 0.49 -1.1 4,234,143 + Shewana3_3534 0.63 +0.3 4,234,371 + +0.5 4,234,490 - -1.7 4,234,490 - +0.3 4,234,622 - Shewana3_3535 0.14 -0.4
Or see this region's nucleotide sequence