Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3532

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3531 and Shewana3_3532 are separated by 10 nucleotidesShewana3_3532 and Shewana3_3533 are separated by 309 nucleotidesShewana3_3533 and Shewana3_3534 are separated by 36 nucleotides Shewana3_3531: Shewana3_3531 - Rh family protein/ammonium transporter (RefSeq), at 4,231,191 to 4,232,441 _3531 Shewana3_3532: Shewana3_3532 - nitrogen regulatory protein P-II (RefSeq), at 4,232,452 to 4,232,790 _3532 Shewana3_3533: Shewana3_3533 - isochorismatase hydrolase (RefSeq), at 4,233,100 to 4,233,642 _3533 Shewana3_3534: Shewana3_3534 - hypothetical protein (RefSeq), at 4,233,679 to 4,234,413 _3534 Position (kb) 4232 4233Strain fitness (log2 ratio) -3 -2 -1 0 1at 4231.482 kb on + strand, within Shewana3_3531at 4231.714 kb on + strand, within Shewana3_3531at 4231.714 kb on + strand, within Shewana3_3531at 4231.740 kb on + strand, within Shewana3_3531at 4231.793 kb on + strand, within Shewana3_3531at 4231.831 kb on + strand, within Shewana3_3531at 4231.863 kb on - strand, within Shewana3_3531at 4231.909 kb on + strand, within Shewana3_3531at 4232.307 kb on + strand, within Shewana3_3531at 4232.307 kb on + strand, within Shewana3_3531at 4232.315 kb on - strand, within Shewana3_3531at 4232.315 kb on - strand, within Shewana3_3531at 4232.317 kb on + strandat 4232.325 kb on - strandat 4232.325 kb on - strandat 4232.402 kb on + strandat 4232.411 kb on - strandat 4232.450 kb on + strandat 4232.507 kb on - strand, within Shewana3_3532at 4232.694 kb on - strand, within Shewana3_3532at 4232.783 kb on + strandat 4232.936 kb on + strandat 4232.942 kb on - strandat 4233.187 kb on - strand, within Shewana3_3533at 4233.212 kb on - strand, within Shewana3_3533at 4233.237 kb on + strand, within Shewana3_3533at 4233.242 kb on + strand, within Shewana3_3533at 4233.285 kb on + strand, within Shewana3_3533at 4233.285 kb on + strand, within Shewana3_3533at 4233.438 kb on - strand, within Shewana3_3533at 4233.586 kb on - strand, within Shewana3_3533

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,231,482 + Shewana3_3531 0.23 +0.2
4,231,714 + Shewana3_3531 0.42 -0.4
4,231,714 + Shewana3_3531 0.42 -0.8
4,231,740 + Shewana3_3531 0.44 -2.4
4,231,793 + Shewana3_3531 0.48 -0.1
4,231,831 + Shewana3_3531 0.51 -0.7
4,231,863 - Shewana3_3531 0.54 -0.3
4,231,909 + Shewana3_3531 0.57 +0.0
4,232,307 + Shewana3_3531 0.89 -0.4
4,232,307 + Shewana3_3531 0.89 +0.4
4,232,315 - Shewana3_3531 0.90 -0.5
4,232,315 - Shewana3_3531 0.90 -0.4
4,232,317 + -3.1
4,232,325 - -0.5
4,232,325 - -0.7
4,232,402 + -0.2
4,232,411 - -1.5
4,232,450 + -0.7
4,232,507 - Shewana3_3532 0.16 -0.7
4,232,694 - Shewana3_3532 0.71 -0.4
4,232,783 + -0.4
4,232,936 + -0.4
4,232,942 - -0.4
4,233,187 - Shewana3_3533 0.16 +0.4
4,233,212 - Shewana3_3533 0.21 +0.2
4,233,237 + Shewana3_3533 0.25 +0.9
4,233,242 + Shewana3_3533 0.26 +0.4
4,233,285 + Shewana3_3533 0.34 +0.3
4,233,285 + Shewana3_3533 0.34 -0.3
4,233,438 - Shewana3_3533 0.62 +0.0
4,233,586 - Shewana3_3533 0.90 -0.4

Or see this region's nucleotide sequence