Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3529 and Shewana3_3530 are separated by 118 nucleotides Shewana3_3530 and Shewana3_3531 are separated by 116 nucleotides Shewana3_3531 and Shewana3_3532 are separated by 10 nucleotides Shewana3_3532 and Shewana3_3533 are separated by 309 nucleotides
Shewana3_3529: Shewana3_3529 - TPR repeat-containing protein (RefSeq), at 4,229,421 to 4,230,608
_3529
Shewana3_3530: Shewana3_3530 - hypothetical protein (RefSeq), at 4,230,727 to 4,231,074
_3530
Shewana3_3531: Shewana3_3531 - Rh family protein/ammonium transporter (RefSeq), at 4,231,191 to 4,232,441
_3531
Shewana3_3532: Shewana3_3532 - nitrogen regulatory protein P-II (RefSeq), at 4,232,452 to 4,232,790
_3532
Shewana3_3533: Shewana3_3533 - isochorismatase hydrolase (RefSeq), at 4,233,100 to 4,233,642
_3533
Position (kb) 4231
4232
4233 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4230.262 kb on - strand, within Shewana3_3529 at 4230.521 kb on + strand at 4230.749 kb on + strand at 4230.817 kb on + strand, within Shewana3_3530 at 4230.824 kb on + strand, within Shewana3_3530 at 4230.824 kb on + strand, within Shewana3_3530 at 4230.832 kb on - strand, within Shewana3_3530 at 4230.847 kb on - strand, within Shewana3_3530 at 4230.903 kb on - strand, within Shewana3_3530 at 4230.933 kb on + strand, within Shewana3_3530 at 4230.997 kb on + strand, within Shewana3_3530 at 4230.997 kb on + strand, within Shewana3_3530 at 4230.997 kb on + strand, within Shewana3_3530 at 4230.998 kb on + strand, within Shewana3_3530 at 4231.037 kb on + strand, within Shewana3_3530 at 4231.045 kb on - strand at 4231.141 kb on + strand at 4231.152 kb on + strand at 4231.182 kb on - strand at 4231.250 kb on + strand at 4231.368 kb on + strand, within Shewana3_3531 at 4231.386 kb on - strand, within Shewana3_3531 at 4231.386 kb on - strand, within Shewana3_3531 at 4231.482 kb on + strand, within Shewana3_3531 at 4231.714 kb on + strand, within Shewana3_3531 at 4231.714 kb on + strand, within Shewana3_3531 at 4231.740 kb on + strand, within Shewana3_3531 at 4231.793 kb on + strand, within Shewana3_3531 at 4231.831 kb on + strand, within Shewana3_3531 at 4231.863 kb on - strand, within Shewana3_3531 at 4231.909 kb on + strand, within Shewana3_3531 at 4232.307 kb on + strand, within Shewana3_3531 at 4232.307 kb on + strand, within Shewana3_3531 at 4232.315 kb on - strand, within Shewana3_3531 at 4232.315 kb on - strand, within Shewana3_3531 at 4232.317 kb on + strand at 4232.325 kb on - strand at 4232.325 kb on - strand at 4232.402 kb on + strand at 4232.411 kb on - strand at 4232.450 kb on + strand at 4232.507 kb on - strand, within Shewana3_3532 at 4232.694 kb on - strand, within Shewana3_3532 at 4232.783 kb on + strand at 4232.936 kb on + strand at 4232.942 kb on - strand at 4233.187 kb on - strand, within Shewana3_3533 at 4233.212 kb on - strand, within Shewana3_3533 at 4233.237 kb on + strand, within Shewana3_3533 at 4233.242 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.438 kb on - strand, within Shewana3_3533
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,230,262 - Shewana3_3529 0.71 +0.1 4,230,521 + +0.5 4,230,749 + +0.4 4,230,817 + Shewana3_3530 0.26 +0.4 4,230,824 + Shewana3_3530 0.28 -0.0 4,230,824 + Shewana3_3530 0.28 +0.1 4,230,832 - Shewana3_3530 0.30 +0.4 4,230,847 - Shewana3_3530 0.34 +0.4 4,230,903 - Shewana3_3530 0.51 +0.4 4,230,933 + Shewana3_3530 0.59 +0.8 4,230,997 + Shewana3_3530 0.78 -0.2 4,230,997 + Shewana3_3530 0.78 +0.4 4,230,997 + Shewana3_3530 0.78 -0.1 4,230,998 + Shewana3_3530 0.78 +0.5 4,231,037 + Shewana3_3530 0.89 -1.3 4,231,045 - +0.1 4,231,141 + -0.2 4,231,152 + -0.8 4,231,182 - -0.1 4,231,250 + -0.8 4,231,368 + Shewana3_3531 0.14 -1.3 4,231,386 - Shewana3_3531 0.16 -0.4 4,231,386 - Shewana3_3531 0.16 -1.0 4,231,482 + Shewana3_3531 0.23 +0.2 4,231,714 + Shewana3_3531 0.42 -0.4 4,231,714 + Shewana3_3531 0.42 -0.8 4,231,740 + Shewana3_3531 0.44 -2.4 4,231,793 + Shewana3_3531 0.48 -0.1 4,231,831 + Shewana3_3531 0.51 -0.7 4,231,863 - Shewana3_3531 0.54 -0.3 4,231,909 + Shewana3_3531 0.57 +0.0 4,232,307 + Shewana3_3531 0.89 -0.4 4,232,307 + Shewana3_3531 0.89 +0.4 4,232,315 - Shewana3_3531 0.90 -0.5 4,232,315 - Shewana3_3531 0.90 -0.4 4,232,317 + -3.1 4,232,325 - -0.5 4,232,325 - -0.7 4,232,402 + -0.2 4,232,411 - -1.5 4,232,450 + -0.7 4,232,507 - Shewana3_3532 0.16 -0.7 4,232,694 - Shewana3_3532 0.71 -0.4 4,232,783 + -0.4 4,232,936 + -0.4 4,232,942 - -0.4 4,233,187 - Shewana3_3533 0.16 +0.4 4,233,212 - Shewana3_3533 0.21 +0.2 4,233,237 + Shewana3_3533 0.25 +0.9 4,233,242 + Shewana3_3533 0.26 +0.4 4,233,285 + Shewana3_3533 0.34 +0.3 4,233,285 + Shewana3_3533 0.34 -0.3 4,233,438 - Shewana3_3533 0.62 +0.0
Or see this region's nucleotide sequence