Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3523 and Shewana3_3524 are separated by 144 nucleotides Shewana3_3524 and Shewana3_3525 are separated by 34 nucleotides Shewana3_3525 and Shewana3_3526 are separated by 82 nucleotides Shewana3_3526 and Shewana3_3527 are separated by 449 nucleotides Shewana3_3527 and Shewana3_3528 are separated by 50 nucleotides
Shewana3_3523: Shewana3_3523 - ferredoxin-dependent glutamate synthase (RefSeq), at 4,223,364 to 4,224,854
_3523
Shewana3_3524: Shewana3_3524 - hypothetical protein (RefSeq), at 4,224,999 to 4,225,205
_3524
Shewana3_3525: Shewana3_3525 - hypothetical protein (RefSeq), at 4,225,240 to 4,225,497
_3525
Shewana3_3526: Shewana3_3526 - ABC transporter related (RefSeq), at 4,225,580 to 4,227,376
_3526
Shewana3_3527: Shewana3_3527 - hypothetical protein (RefSeq), at 4,227,826 to 4,228,002
_3527
Shewana3_3528: Shewana3_3528 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 4,228,053 to 4,229,111
_3528
Position (kb) 4225
4226
4227
4228 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4224.672 kb on - strand, within Shewana3_3523 at 4224.732 kb on - strand at 4224.732 kb on - strand at 4224.732 kb on - strand at 4224.743 kb on + strand at 4224.751 kb on - strand at 4224.760 kb on + strand at 4224.778 kb on - strand at 4224.944 kb on + strand at 4224.971 kb on - strand at 4225.334 kb on - strand, within Shewana3_3525 at 4225.347 kb on + strand, within Shewana3_3525 at 4225.360 kb on + strand, within Shewana3_3525 at 4225.360 kb on + strand, within Shewana3_3525 at 4225.368 kb on - strand, within Shewana3_3525 at 4225.370 kb on + strand, within Shewana3_3525 at 4225.541 kb on - strand at 4225.917 kb on - strand, within Shewana3_3526 at 4226.161 kb on - strand, within Shewana3_3526 at 4226.313 kb on - strand, within Shewana3_3526 at 4226.362 kb on - strand, within Shewana3_3526 at 4226.403 kb on + strand, within Shewana3_3526 at 4226.408 kb on + strand, within Shewana3_3526 at 4226.486 kb on + strand, within Shewana3_3526 at 4226.491 kb on + strand, within Shewana3_3526 at 4226.499 kb on - strand, within Shewana3_3526 at 4226.499 kb on - strand, within Shewana3_3526 at 4226.527 kb on + strand, within Shewana3_3526 at 4226.527 kb on + strand, within Shewana3_3526 at 4226.642 kb on + strand, within Shewana3_3526 at 4226.650 kb on - strand, within Shewana3_3526 at 4226.653 kb on + strand, within Shewana3_3526 at 4226.661 kb on - strand, within Shewana3_3526 at 4226.913 kb on + strand, within Shewana3_3526 at 4226.923 kb on + strand, within Shewana3_3526 at 4226.931 kb on - strand, within Shewana3_3526 at 4227.114 kb on + strand, within Shewana3_3526 at 4227.125 kb on - strand, within Shewana3_3526 at 4227.165 kb on + strand, within Shewana3_3526 at 4227.165 kb on + strand, within Shewana3_3526 at 4227.165 kb on + strand, within Shewana3_3526 at 4227.165 kb on + strand, within Shewana3_3526 at 4227.259 kb on + strand at 4227.306 kb on + strand at 4227.379 kb on + strand at 4227.379 kb on + strand at 4227.379 kb on + strand at 4227.387 kb on - strand at 4227.387 kb on - strand at 4227.738 kb on - strand at 4228.059 kb on - strand at 4228.124 kb on - strand at 4228.151 kb on - strand at 4228.161 kb on + strand, within Shewana3_3528
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,224,672 - Shewana3_3523 0.88 -0.1 4,224,732 - -1.1 4,224,732 - +0.4 4,224,732 - +0.0 4,224,743 + -0.7 4,224,751 - -0.9 4,224,760 + -0.7 4,224,778 - +0.6 4,224,944 + +0.3 4,224,971 - +0.2 4,225,334 - Shewana3_3525 0.36 -6.1 4,225,347 + Shewana3_3525 0.41 -5.3 4,225,360 + Shewana3_3525 0.47 -5.2 4,225,360 + Shewana3_3525 0.47 -4.9 4,225,368 - Shewana3_3525 0.50 -5.2 4,225,370 + Shewana3_3525 0.50 -5.8 4,225,541 - -3.4 4,225,917 - Shewana3_3526 0.19 +0.3 4,226,161 - Shewana3_3526 0.32 -5.5 4,226,313 - Shewana3_3526 0.41 +0.7 4,226,362 - Shewana3_3526 0.44 +0.1 4,226,403 + Shewana3_3526 0.46 +0.4 4,226,408 + Shewana3_3526 0.46 -0.6 4,226,486 + Shewana3_3526 0.50 +0.9 4,226,491 + Shewana3_3526 0.51 -0.5 4,226,499 - Shewana3_3526 0.51 +0.6 4,226,499 - Shewana3_3526 0.51 +0.5 4,226,527 + Shewana3_3526 0.53 +0.6 4,226,527 + Shewana3_3526 0.53 -1.0 4,226,642 + Shewana3_3526 0.59 -0.4 4,226,650 - Shewana3_3526 0.60 +1.1 4,226,653 + Shewana3_3526 0.60 +0.8 4,226,661 - Shewana3_3526 0.60 +0.4 4,226,913 + Shewana3_3526 0.74 +0.4 4,226,923 + Shewana3_3526 0.75 +0.2 4,226,931 - Shewana3_3526 0.75 +0.2 4,227,114 + Shewana3_3526 0.85 -0.8 4,227,125 - Shewana3_3526 0.86 +0.1 4,227,165 + Shewana3_3526 0.88 +0.3 4,227,165 + Shewana3_3526 0.88 +0.5 4,227,165 + Shewana3_3526 0.88 +1.5 4,227,165 + Shewana3_3526 0.88 +0.2 4,227,259 + +0.8 4,227,306 + -0.1 4,227,379 + -0.2 4,227,379 + +0.5 4,227,379 + -0.9 4,227,387 - -1.2 4,227,387 - -0.2 4,227,738 - -1.0 4,228,059 - -0.5 4,228,124 - -1.0 4,228,151 - -0.3 4,228,161 + Shewana3_3528 0.10 +0.4
Or see this region's nucleotide sequence