Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3514

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3513 and Shewana3_3514 are separated by 206 nucleotidesShewana3_3514 and Shewana3_3515 are separated by 139 nucleotides Shewana3_3513: Shewana3_3513 - Dyp-type peroxidase family protein (RefSeq), at 4,213,020 to 4,213,961 _3513 Shewana3_3514: Shewana3_3514 - gamma-glutamyltransferase 2 (RefSeq), at 4,214,168 to 4,215,880 _3514 Shewana3_3515: Shewana3_3515 - ABC transporter related (RefSeq), at 4,216,020 to 4,217,069 _3515 Position (kb) 4214 4215 4216Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 4213.219 kb on + strand, within Shewana3_3513at 4213.221 kb on - strand, within Shewana3_3513at 4213.262 kb on - strand, within Shewana3_3513at 4213.275 kb on - strand, within Shewana3_3513at 4213.900 kb on - strandat 4213.942 kb on - strandat 4214.151 kb on - strandat 4214.151 kb on - strandat 4214.295 kb on + strandat 4214.586 kb on - strand, within Shewana3_3514at 4214.658 kb on + strand, within Shewana3_3514at 4214.700 kb on - strand, within Shewana3_3514at 4214.742 kb on - strand, within Shewana3_3514at 4214.957 kb on + strand, within Shewana3_3514at 4215.079 kb on - strand, within Shewana3_3514at 4215.106 kb on + strand, within Shewana3_3514at 4215.111 kb on - strand, within Shewana3_3514at 4215.114 kb on - strand, within Shewana3_3514at 4215.525 kb on + strand, within Shewana3_3514at 4215.585 kb on + strand, within Shewana3_3514at 4215.763 kb on + strandat 4215.771 kb on - strandat 4215.782 kb on + strandat 4215.896 kb on + strandat 4215.964 kb on - strandat 4216.034 kb on + strandat 4216.042 kb on - strandat 4216.189 kb on + strand, within Shewana3_3515at 4216.322 kb on - strand, within Shewana3_3515at 4216.401 kb on - strand, within Shewana3_3515at 4216.432 kb on - strand, within Shewana3_3515at 4216.434 kb on - strand, within Shewana3_3515at 4216.460 kb on - strand, within Shewana3_3515at 4216.515 kb on - strand, within Shewana3_3515at 4216.633 kb on + strand, within Shewana3_3515at 4216.669 kb on - strand, within Shewana3_3515at 4216.726 kb on + strand, within Shewana3_3515at 4216.734 kb on - strand, within Shewana3_3515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,213,219 + Shewana3_3513 0.21 -6.7
4,213,221 - Shewana3_3513 0.21 -5.1
4,213,262 - Shewana3_3513 0.26 -5.4
4,213,275 - Shewana3_3513 0.27 -2.3
4,213,900 - -7.3
4,213,942 - -4.6
4,214,151 - +0.4
4,214,151 - +0.6
4,214,295 + +0.2
4,214,586 - Shewana3_3514 0.24 -0.6
4,214,658 + Shewana3_3514 0.29 +1.2
4,214,700 - Shewana3_3514 0.31 -0.6
4,214,742 - Shewana3_3514 0.34 +0.7
4,214,957 + Shewana3_3514 0.46 +0.0
4,215,079 - Shewana3_3514 0.53 +0.3
4,215,106 + Shewana3_3514 0.55 -0.9
4,215,111 - Shewana3_3514 0.55 -3.9
4,215,114 - Shewana3_3514 0.55 +0.5
4,215,525 + Shewana3_3514 0.79 -1.0
4,215,585 + Shewana3_3514 0.83 +0.2
4,215,763 + -1.1
4,215,771 - +0.3
4,215,782 + -1.3
4,215,896 + +0.5
4,215,964 - +0.3
4,216,034 + +0.2
4,216,042 - -1.0
4,216,189 + Shewana3_3515 0.16 +0.4
4,216,322 - Shewana3_3515 0.29 +0.4
4,216,401 - Shewana3_3515 0.36 +0.3
4,216,432 - Shewana3_3515 0.39 +0.3
4,216,434 - Shewana3_3515 0.39 +0.2
4,216,460 - Shewana3_3515 0.42 +0.2
4,216,515 - Shewana3_3515 0.47 +0.4
4,216,633 + Shewana3_3515 0.58 +0.3
4,216,669 - Shewana3_3515 0.62 +0.4
4,216,726 + Shewana3_3515 0.67 -1.0
4,216,734 - Shewana3_3515 0.68 +0.7

Or see this region's nucleotide sequence