Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3513 and Shewana3_3514 are separated by 206 nucleotides Shewana3_3514 and Shewana3_3515 are separated by 139 nucleotides
Shewana3_3513: Shewana3_3513 - Dyp-type peroxidase family protein (RefSeq), at 4,213,020 to 4,213,961
_3513
Shewana3_3514: Shewana3_3514 - gamma-glutamyltransferase 2 (RefSeq), at 4,214,168 to 4,215,880
_3514
Shewana3_3515: Shewana3_3515 - ABC transporter related (RefSeq), at 4,216,020 to 4,217,069
_3515
Position (kb)
4214
4215
4216 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 4213.219 kb on + strand, within Shewana3_3513 at 4213.221 kb on - strand, within Shewana3_3513 at 4213.262 kb on - strand, within Shewana3_3513 at 4213.275 kb on - strand, within Shewana3_3513 at 4213.900 kb on - strand at 4213.942 kb on - strand at 4214.151 kb on - strand at 4214.151 kb on - strand at 4214.295 kb on + strand at 4214.586 kb on - strand, within Shewana3_3514 at 4214.658 kb on + strand, within Shewana3_3514 at 4214.700 kb on - strand, within Shewana3_3514 at 4214.742 kb on - strand, within Shewana3_3514 at 4214.957 kb on + strand, within Shewana3_3514 at 4215.079 kb on - strand, within Shewana3_3514 at 4215.106 kb on + strand, within Shewana3_3514 at 4215.111 kb on - strand, within Shewana3_3514 at 4215.114 kb on - strand, within Shewana3_3514 at 4215.525 kb on + strand, within Shewana3_3514 at 4215.585 kb on + strand, within Shewana3_3514 at 4215.763 kb on + strand at 4215.771 kb on - strand at 4215.782 kb on + strand at 4215.896 kb on + strand at 4215.964 kb on - strand at 4216.034 kb on + strand at 4216.042 kb on - strand at 4216.189 kb on + strand, within Shewana3_3515 at 4216.322 kb on - strand, within Shewana3_3515 at 4216.401 kb on - strand, within Shewana3_3515 at 4216.432 kb on - strand, within Shewana3_3515 at 4216.434 kb on - strand, within Shewana3_3515 at 4216.460 kb on - strand, within Shewana3_3515 at 4216.515 kb on - strand, within Shewana3_3515 at 4216.633 kb on + strand, within Shewana3_3515 at 4216.669 kb on - strand, within Shewana3_3515 at 4216.726 kb on + strand, within Shewana3_3515 at 4216.734 kb on - strand, within Shewana3_3515
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,213,219 + Shewana3_3513 0.21 -6.7 4,213,221 - Shewana3_3513 0.21 -5.1 4,213,262 - Shewana3_3513 0.26 -5.4 4,213,275 - Shewana3_3513 0.27 -2.3 4,213,900 - -7.3 4,213,942 - -4.6 4,214,151 - +0.4 4,214,151 - +0.6 4,214,295 + +0.2 4,214,586 - Shewana3_3514 0.24 -0.6 4,214,658 + Shewana3_3514 0.29 +1.2 4,214,700 - Shewana3_3514 0.31 -0.6 4,214,742 - Shewana3_3514 0.34 +0.7 4,214,957 + Shewana3_3514 0.46 +0.0 4,215,079 - Shewana3_3514 0.53 +0.3 4,215,106 + Shewana3_3514 0.55 -0.9 4,215,111 - Shewana3_3514 0.55 -3.9 4,215,114 - Shewana3_3514 0.55 +0.5 4,215,525 + Shewana3_3514 0.79 -1.0 4,215,585 + Shewana3_3514 0.83 +0.2 4,215,763 + -1.1 4,215,771 - +0.3 4,215,782 + -1.3 4,215,896 + +0.5 4,215,964 - +0.3 4,216,034 + +0.2 4,216,042 - -1.0 4,216,189 + Shewana3_3515 0.16 +0.4 4,216,322 - Shewana3_3515 0.29 +0.4 4,216,401 - Shewana3_3515 0.36 +0.3 4,216,432 - Shewana3_3515 0.39 +0.3 4,216,434 - Shewana3_3515 0.39 +0.2 4,216,460 - Shewana3_3515 0.42 +0.2 4,216,515 - Shewana3_3515 0.47 +0.4 4,216,633 + Shewana3_3515 0.58 +0.3 4,216,669 - Shewana3_3515 0.62 +0.4 4,216,726 + Shewana3_3515 0.67 -1.0 4,216,734 - Shewana3_3515 0.68 +0.7
Or see this region's nucleotide sequence