Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3510 and Shewana3_3511 are separated by 223 nucleotides Shewana3_3511 and Shewana3_3512 are separated by 103 nucleotides Shewana3_3512 and Shewana3_3513 are separated by 64 nucleotides
Shewana3_3510: Shewana3_3510 - arginine repressor (RefSeq), at 4,210,623 to 4,211,093
_3510
Shewana3_3511: Shewana3_3511 - NAD-dependent epimerase/dehydratase (RefSeq), at 4,211,317 to 4,211,949
_3511
Shewana3_3512: Shewana3_3512 - transcriptional regulator (RefSeq), at 4,212,053 to 4,212,955
_3512
Shewana3_3513: Shewana3_3513 - Dyp-type peroxidase family protein (RefSeq), at 4,213,020 to 4,213,961
_3513
Position (kb) 4212
4213 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 4211.123 kb on + strand at 4211.259 kb on + strand at 4211.386 kb on - strand, within Shewana3_3511 at 4211.563 kb on + strand, within Shewana3_3511 at 4211.625 kb on + strand, within Shewana3_3511 at 4211.805 kb on + strand, within Shewana3_3511 at 4211.805 kb on + strand, within Shewana3_3511 at 4211.871 kb on + strand, within Shewana3_3511 at 4211.930 kb on + strand at 4212.168 kb on + strand, within Shewana3_3512 at 4212.224 kb on - strand, within Shewana3_3512 at 4212.235 kb on + strand, within Shewana3_3512 at 4212.245 kb on + strand, within Shewana3_3512 at 4212.313 kb on + strand, within Shewana3_3512 at 4212.362 kb on - strand, within Shewana3_3512 at 4212.379 kb on - strand, within Shewana3_3512 at 4212.420 kb on - strand, within Shewana3_3512 at 4212.441 kb on + strand, within Shewana3_3512 at 4212.471 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.484 kb on - strand, within Shewana3_3512 at 4212.486 kb on + strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.526 kb on + strand, within Shewana3_3512 at 4212.552 kb on - strand, within Shewana3_3512 at 4212.667 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.684 kb on - strand, within Shewana3_3512 at 4212.747 kb on + strand, within Shewana3_3512 at 4212.841 kb on + strand, within Shewana3_3512 at 4212.849 kb on - strand, within Shewana3_3512 at 4213.008 kb on - strand at 4213.024 kb on + strand at 4213.074 kb on + strand at 4213.084 kb on + strand at 4213.158 kb on + strand, within Shewana3_3513 at 4213.219 kb on + strand, within Shewana3_3513 at 4213.221 kb on - strand, within Shewana3_3513 at 4213.262 kb on - strand, within Shewana3_3513 at 4213.275 kb on - strand, within Shewana3_3513 at 4213.900 kb on - strand at 4213.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,211,123 + -0.9 4,211,259 + +0.7 4,211,386 - Shewana3_3511 0.11 -0.8 4,211,563 + Shewana3_3511 0.39 +0.1 4,211,625 + Shewana3_3511 0.49 -0.5 4,211,805 + Shewana3_3511 0.77 +0.1 4,211,805 + Shewana3_3511 0.77 +1.0 4,211,871 + Shewana3_3511 0.88 -0.8 4,211,930 + -4.7 4,212,168 + Shewana3_3512 0.13 +0.5 4,212,224 - Shewana3_3512 0.19 +0.1 4,212,235 + Shewana3_3512 0.20 +0.6 4,212,245 + Shewana3_3512 0.21 +0.0 4,212,313 + Shewana3_3512 0.29 +0.3 4,212,362 - Shewana3_3512 0.34 +0.5 4,212,379 - Shewana3_3512 0.36 +0.5 4,212,420 - Shewana3_3512 0.41 +0.2 4,212,441 + Shewana3_3512 0.43 +0.5 4,212,471 + Shewana3_3512 0.46 +0.1 4,212,481 + Shewana3_3512 0.47 -1.1 4,212,481 + Shewana3_3512 0.47 -1.3 4,212,481 + Shewana3_3512 0.47 +0.4 4,212,484 - Shewana3_3512 0.48 -1.6 4,212,486 + Shewana3_3512 0.48 -0.2 4,212,489 - Shewana3_3512 0.48 +0.2 4,212,489 - Shewana3_3512 0.48 -1.1 4,212,489 - Shewana3_3512 0.48 -0.2 4,212,494 - Shewana3_3512 0.49 -0.6 4,212,494 - Shewana3_3512 0.49 +0.2 4,212,526 + Shewana3_3512 0.52 +0.1 4,212,552 - Shewana3_3512 0.55 +0.7 4,212,667 + Shewana3_3512 0.68 +0.1 4,212,676 + Shewana3_3512 0.69 +0.3 4,212,676 + Shewana3_3512 0.69 +0.4 4,212,676 + Shewana3_3512 0.69 -0.1 4,212,684 - Shewana3_3512 0.70 +0.3 4,212,747 + Shewana3_3512 0.77 -0.4 4,212,841 + Shewana3_3512 0.87 +0.3 4,212,849 - Shewana3_3512 0.88 +0.6 4,213,008 - -1.5 4,213,024 + -1.2 4,213,074 + -4.4 4,213,084 + -3.5 4,213,158 + Shewana3_3513 0.15 -5.8 4,213,219 + Shewana3_3513 0.21 -6.7 4,213,221 - Shewana3_3513 0.21 -5.1 4,213,262 - Shewana3_3513 0.26 -5.4 4,213,275 - Shewana3_3513 0.27 -2.3 4,213,900 - -7.3 4,213,942 - -4.6
Or see this region's nucleotide sequence