Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3414

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3413 and Shewana3_3414 are separated by 200 nucleotidesShewana3_3414 and Shewana3_3415 are separated by 365 nucleotides Shewana3_3413: Shewana3_3413 - curlin-associated protein (RefSeq), at 4,082,707 to 4,084,215 _3413 Shewana3_3414: Shewana3_3414 - LuxR family transcriptional regulator (RefSeq), at 4,084,416 to 4,085,081 _3414 Shewana3_3415: Shewana3_3415 - hypothetical protein (RefSeq), at 4,085,447 to 4,086,055 _3415 Position (kb) 4084 4085 4086Strain fitness (log2 ratio) -1 0 1at 4083.479 kb on - strand, within Shewana3_3413at 4083.534 kb on - strand, within Shewana3_3413at 4083.641 kb on - strand, within Shewana3_3413at 4083.843 kb on + strand, within Shewana3_3413at 4083.918 kb on - strand, within Shewana3_3413at 4083.937 kb on + strand, within Shewana3_3413at 4083.952 kb on + strand, within Shewana3_3413at 4084.067 kb on + strandat 4084.369 kb on - strandat 4084.374 kb on - strandat 4084.381 kb on - strandat 4084.407 kb on + strandat 4084.415 kb on - strandat 4084.469 kb on - strandat 4084.544 kb on + strand, within Shewana3_3414at 4084.552 kb on - strand, within Shewana3_3414at 4084.612 kb on - strand, within Shewana3_3414at 4084.905 kb on + strand, within Shewana3_3414at 4085.316 kb on + strandat 4085.324 kb on - strandat 4085.445 kb on + strandat 4085.447 kb on - strandat 4085.447 kb on - strandat 4085.453 kb on - strandat 4085.488 kb on - strandat 4085.590 kb on - strand, within Shewana3_3415at 4085.798 kb on + strand, within Shewana3_3415at 4085.803 kb on + strand, within Shewana3_3415at 4085.832 kb on + strand, within Shewana3_3415at 4085.845 kb on - strand, within Shewana3_3415at 4086.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,083,479 - Shewana3_3413 0.51 -0.5
4,083,534 - Shewana3_3413 0.55 +0.9
4,083,641 - Shewana3_3413 0.62 +0.8
4,083,843 + Shewana3_3413 0.75 -1.0
4,083,918 - Shewana3_3413 0.80 -0.8
4,083,937 + Shewana3_3413 0.82 +0.2
4,083,952 + Shewana3_3413 0.83 +0.5
4,084,067 + -1.4
4,084,369 - -0.9
4,084,374 - -0.8
4,084,381 - +0.2
4,084,407 + +0.5
4,084,415 - -0.9
4,084,469 - -0.9
4,084,544 + Shewana3_3414 0.19 -0.5
4,084,552 - Shewana3_3414 0.20 +0.6
4,084,612 - Shewana3_3414 0.29 -1.0
4,084,905 + Shewana3_3414 0.73 +0.2
4,085,316 + +0.7
4,085,324 - +0.0
4,085,445 + -0.6
4,085,447 - +0.5
4,085,447 - +0.0
4,085,453 - -1.0
4,085,488 - -1.2
4,085,590 - Shewana3_3415 0.23 -0.9
4,085,798 + Shewana3_3415 0.58 +0.3
4,085,803 + Shewana3_3415 0.58 +0.0
4,085,832 + Shewana3_3415 0.63 +1.0
4,085,845 - Shewana3_3415 0.65 -1.3
4,086,016 - -1.2

Or see this region's nucleotide sequence