Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3412

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3411 and Shewana3_3412 are separated by 401 nucleotidesShewana3_3412 and Shewana3_3413 are separated by 14 nucleotides Shewana3_3411: Shewana3_3411 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 4,079,364 to 4,081,871 _3411 Shewana3_3412: Shewana3_3412 - curlin-associated protein (RefSeq), at 4,082,273 to 4,082,692 _3412 Shewana3_3413: Shewana3_3413 - curlin-associated protein (RefSeq), at 4,082,707 to 4,084,215 _3413 Position (kb) 4082 4083Strain fitness (log2 ratio) -1 0 1at 4081.332 kb on - strand, within Shewana3_3411at 4081.341 kb on + strand, within Shewana3_3411at 4081.344 kb on - strand, within Shewana3_3411at 4081.464 kb on + strand, within Shewana3_3411at 4081.627 kb on - strandat 4081.627 kb on - strandat 4081.746 kb on + strandat 4081.882 kb on + strandat 4082.280 kb on + strandat 4082.303 kb on - strandat 4082.370 kb on - strand, within Shewana3_3412at 4082.495 kb on + strand, within Shewana3_3412at 4082.694 kb on - strandat 4082.801 kb on + strandat 4082.809 kb on - strandat 4082.809 kb on - strandat 4082.966 kb on - strand, within Shewana3_3413at 4083.078 kb on - strand, within Shewana3_3413at 4083.272 kb on + strand, within Shewana3_3413at 4083.272 kb on + strand, within Shewana3_3413at 4083.333 kb on + strand, within Shewana3_3413at 4083.357 kb on - strand, within Shewana3_3413at 4083.479 kb on - strand, within Shewana3_3413at 4083.534 kb on - strand, within Shewana3_3413at 4083.641 kb on - strand, within Shewana3_3413

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,081,332 - Shewana3_3411 0.78 +0.4
4,081,341 + Shewana3_3411 0.79 -0.9
4,081,344 - Shewana3_3411 0.79 -0.9
4,081,464 + Shewana3_3411 0.84 +0.5
4,081,627 - +0.7
4,081,627 - -0.0
4,081,746 + +0.7
4,081,882 + -1.0
4,082,280 + +0.7
4,082,303 - +0.5
4,082,370 - Shewana3_3412 0.23 +0.0
4,082,495 + Shewana3_3412 0.53 +0.4
4,082,694 - +0.6
4,082,801 + +0.4
4,082,809 - -0.9
4,082,809 - +0.3
4,082,966 - Shewana3_3413 0.17 +0.3
4,083,078 - Shewana3_3413 0.25 -1.1
4,083,272 + Shewana3_3413 0.37 +0.4
4,083,272 + Shewana3_3413 0.37 -1.1
4,083,333 + Shewana3_3413 0.41 -0.9
4,083,357 - Shewana3_3413 0.43 +0.6
4,083,479 - Shewana3_3413 0.51 -0.5
4,083,534 - Shewana3_3413 0.55 +0.9
4,083,641 - Shewana3_3413 0.62 +0.8

Or see this region's nucleotide sequence