Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3301 and Shewana3_3302 are separated by 26 nucleotides Shewana3_3302 and Shewana3_3303 are separated by 104 nucleotides Shewana3_3303 and Shewana3_3304 are separated by 674 nucleotides
Shewana3_3301: Shewana3_3301 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,955,522 to 3,960,531
_3301
Shewana3_3302: Shewana3_3302 - ISPsy11, transposase OrfA (RefSeq), at 3,960,558 to 3,960,950
_3302
Shewana3_3303: Shewana3_3303 - integrase catalytic subunit (RefSeq), at 3,961,055 to 3,961,774
_3303
Shewana3_3304: Shewana3_3304 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,962,449 to 3,967,569
_3304
Position (kb)
3961
3962 Strain fitness (log2 ratio)
-1
0
1 at 3960.093 kb on + strand at 3960.113 kb on + strand at 3960.190 kb on - strand at 3960.291 kb on + strand at 3960.328 kb on - strand at 3960.343 kb on - strand at 3960.343 kb on - strand at 3960.374 kb on + strand at 3960.382 kb on - strand at 3960.452 kb on + strand at 3960.457 kb on + strand at 3960.473 kb on + strand at 3960.481 kb on - strand at 3960.510 kb on - strand at 3961.815 kb on + strand at 3961.820 kb on + strand at 3961.823 kb on - strand at 3961.858 kb on + strand at 3961.884 kb on - strand at 3961.933 kb on - strand at 3961.933 kb on - strand at 3962.017 kb on + strand at 3962.153 kb on + strand at 3962.183 kb on - strand at 3962.194 kb on + strand at 3962.194 kb on + strand at 3962.194 kb on + strand at 3962.481 kb on + strand at 3962.575 kb on - strand at 3962.599 kb on + strand at 3962.669 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,960,093 + -1.1 3,960,113 + -0.6 3,960,190 - +0.2 3,960,291 + +0.3 3,960,328 - -0.1 3,960,343 - +0.2 3,960,343 - +0.5 3,960,374 + +0.7 3,960,382 - -0.9 3,960,452 + +0.7 3,960,457 + +0.3 3,960,473 + +0.4 3,960,481 - +0.2 3,960,510 - +0.5 3,961,815 + -0.9 3,961,820 + +0.5 3,961,823 - +0.6 3,961,858 + -0.1 3,961,884 - -0.9 3,961,933 - -0.6 3,961,933 - +0.2 3,962,017 + +0.7 3,962,153 + -1.0 3,962,183 - +0.5 3,962,194 + -0.6 3,962,194 + +0.5 3,962,194 + -0.6 3,962,481 + +0.4 3,962,575 - +0.0 3,962,599 + -0.7 3,962,669 + +0.0
Or see this region's nucleotide sequence