Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt apaG and apaH are separated by 21 nucleotides apaH and Shewana3_3212 are separated by 96 nucleotides Shewana3_3212 and Shewana3_3213 are separated by 365 nucleotides Shewana3_3213 and Shewana3_3214 are separated by 202 nucleotides
Shewana3_3210: apaG - ApaG (RefSeq), at 3,854,512 to 3,854,892
apaG
Shewana3_3211: apaH - diadenosine tetraphosphatase (RefSeq), at 3,854,914 to 3,855,738
apaH
Shewana3_3212: Shewana3_3212 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,855,835 to 3,857,856
_3212
Shewana3_3213: Shewana3_3213 - hypothetical protein (RefSeq), at 3,858,222 to 3,858,635
_3213
Shewana3_3214: Shewana3_3214 - dihydrofolate reductase (RefSeq), at 3,858,838 to 3,859,320
_3214
Position (kb)
3855
3856
3857
3858 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3854.994 kb on + strand at 3855.312 kb on - strand, within apaH at 3855.338 kb on + strand, within apaH at 3855.413 kb on + strand, within apaH at 3855.759 kb on + strand at 3855.759 kb on + strand at 3856.404 kb on + strand, within Shewana3_3212 at 3856.617 kb on - strand, within Shewana3_3212 at 3856.627 kb on - strand, within Shewana3_3212 at 3857.044 kb on - strand, within Shewana3_3212 at 3857.044 kb on - strand, within Shewana3_3212 at 3857.308 kb on + strand, within Shewana3_3212 at 3857.486 kb on - strand, within Shewana3_3212 at 3857.527 kb on + strand, within Shewana3_3212 at 3857.591 kb on - strand, within Shewana3_3212 at 3858.065 kb on + strand at 3858.281 kb on + strand, within Shewana3_3213 at 3858.307 kb on + strand, within Shewana3_3213 at 3858.418 kb on - strand, within Shewana3_3213 at 3858.821 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,854,994 + -4.4 3,855,312 - apaH Shewana3_3211 0.48 -3.1 3,855,338 + apaH Shewana3_3211 0.51 -2.9 3,855,413 + apaH Shewana3_3211 0.60 -4.3 3,855,759 + -0.5 3,855,759 + -0.8 3,856,404 + Shewana3_3212 0.28 +1.0 3,856,617 - Shewana3_3212 0.39 +0.4 3,856,627 - Shewana3_3212 0.39 -0.1 3,857,044 - Shewana3_3212 0.60 -1.0 3,857,044 - Shewana3_3212 0.60 +0.2 3,857,308 + Shewana3_3212 0.73 +0.4 3,857,486 - Shewana3_3212 0.82 -0.4 3,857,527 + Shewana3_3212 0.84 +0.3 3,857,591 - Shewana3_3212 0.87 -0.1 3,858,065 + +0.3 3,858,281 + Shewana3_3213 0.14 +0.2 3,858,307 + Shewana3_3213 0.21 +0.6 3,858,418 - Shewana3_3213 0.47 +0.6 3,858,821 + +0.9
Or see this region's nucleotide sequence