Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3178 and Shewana3_3179 are separated by 144 nucleotides Shewana3_3179 and Shewana3_3180 are separated by 81 nucleotides Shewana3_3180 and Shewana3_3181 are separated by 726 nucleotides
Shewana3_3178: Shewana3_3178 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,818,522 to 3,818,938
_3178
Shewana3_3179: Shewana3_3179 - hypothetical protein (RefSeq), at 3,819,083 to 3,819,553
_3179
Shewana3_3180: Shewana3_3180 - GPR1/FUN34/yaaH family protein (RefSeq), at 3,819,635 to 3,820,204
_3180
Shewana3_3181: Shewana3_3181 - hypothetical protein (RefSeq), at 3,820,931 to 3,821,167
_3181
Position (kb)
3819
3820
3821 Strain fitness (log2 ratio)
-1
0
1 at 3818.749 kb on - strand, within Shewana3_3178 at 3818.779 kb on - strand, within Shewana3_3178 at 3818.870 kb on + strand, within Shewana3_3178 at 3818.878 kb on - strand, within Shewana3_3178 at 3818.947 kb on - strand at 3818.995 kb on + strand at 3818.995 kb on + strand at 3819.003 kb on - strand at 3819.142 kb on + strand, within Shewana3_3179 at 3819.152 kb on - strand, within Shewana3_3179 at 3819.209 kb on - strand, within Shewana3_3179 at 3819.270 kb on + strand, within Shewana3_3179 at 3819.289 kb on - strand, within Shewana3_3179 at 3819.371 kb on - strand, within Shewana3_3179 at 3819.641 kb on - strand at 3819.677 kb on + strand at 3819.898 kb on + strand, within Shewana3_3180 at 3819.953 kb on - strand, within Shewana3_3180 at 3820.204 kb on + strand at 3820.304 kb on - strand at 3820.488 kb on + strand at 3820.496 kb on - strand at 3820.496 kb on - strand at 3820.536 kb on + strand at 3820.536 kb on + strand at 3820.540 kb on - strand at 3820.544 kb on - strand at 3820.639 kb on - strand at 3820.685 kb on + strand at 3820.693 kb on - strand at 3820.722 kb on + strand at 3820.740 kb on - strand at 3820.854 kb on - strand at 3820.967 kb on + strand, within Shewana3_3181 at 3821.028 kb on + strand, within Shewana3_3181 at 3821.102 kb on + strand, within Shewana3_3181
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,818,749 - Shewana3_3178 0.54 -1.4 3,818,779 - Shewana3_3178 0.62 +0.6 3,818,870 + Shewana3_3178 0.83 -0.5 3,818,878 - Shewana3_3178 0.85 +0.4 3,818,947 - -0.6 3,818,995 + -0.8 3,818,995 + +0.2 3,819,003 - +0.6 3,819,142 + Shewana3_3179 0.13 +0.4 3,819,152 - Shewana3_3179 0.15 +0.0 3,819,209 - Shewana3_3179 0.27 +0.9 3,819,270 + Shewana3_3179 0.40 -1.7 3,819,289 - Shewana3_3179 0.44 -0.5 3,819,371 - Shewana3_3179 0.61 -0.5 3,819,641 - -0.9 3,819,677 + +0.4 3,819,898 + Shewana3_3180 0.46 -1.6 3,819,953 - Shewana3_3180 0.56 -0.8 3,820,204 + +0.6 3,820,304 - +0.9 3,820,488 + -0.9 3,820,496 - +0.2 3,820,496 - +1.0 3,820,536 + -0.1 3,820,536 + +0.5 3,820,540 - +0.3 3,820,544 - +0.2 3,820,639 - +0.3 3,820,685 + -0.6 3,820,693 - -0.9 3,820,722 + -0.1 3,820,740 - +0.2 3,820,854 - +0.1 3,820,967 + Shewana3_3181 0.15 -0.3 3,821,028 + Shewana3_3181 0.41 -1.2 3,821,102 + Shewana3_3181 0.72 -0.1
Or see this region's nucleotide sequence