Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3038 and thyA are separated by 118 nucleotides thyA and Shewana3_3040 overlap by 1 nucleotides Shewana3_3040 and Shewana3_3041 are separated by 45 nucleotides Shewana3_3041 and Shewana3_3042 are separated by 58 nucleotides
Shewana3_3038: Shewana3_3038 - Na+/H+ antiporter NhaA (RefSeq), at 3,641,862 to 3,643,031
_3038
Shewana3_3039: thyA - thymidylate synthase (RefSeq), at 3,643,150 to 3,643,944
thyA
Shewana3_3040: Shewana3_3040 - prolipoprotein diacylglyceryl transferase (RefSeq), at 3,643,944 to 3,644,750
_3040
Shewana3_3041: Shewana3_3041 - hypothetical protein (RefSeq), at 3,644,796 to 3,645,596
_3041
Shewana3_3042: Shewana3_3042 - phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq), at 3,645,655 to 3,647,889
_3042
Position (kb)
3643
3644
3645 Strain fitness (log2 ratio)
-2
-1
0
1 at 3644.863 kb on - strand at 3644.874 kb on - strand at 3644.959 kb on - strand, within Shewana3_3041 at 3645.003 kb on - strand, within Shewana3_3041 at 3645.010 kb on - strand, within Shewana3_3041 at 3645.263 kb on - strand, within Shewana3_3041 at 3645.463 kb on - strand, within Shewana3_3041 at 3645.478 kb on + strand, within Shewana3_3041 at 3645.486 kb on - strand, within Shewana3_3041 at 3645.600 kb on + strand at 3645.600 kb on + strand at 3645.600 kb on + strand at 3645.608 kb on - strand at 3645.633 kb on - strand at 3645.682 kb on - strand at 3645.740 kb on - strand at 3645.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,644,863 - -0.3 3,644,874 - -0.3 3,644,959 - Shewana3_3041 0.20 -1.7 3,645,003 - Shewana3_3041 0.26 -0.6 3,645,010 - Shewana3_3041 0.27 -0.6 3,645,263 - Shewana3_3041 0.58 -2.4 3,645,463 - Shewana3_3041 0.83 -1.5 3,645,478 + Shewana3_3041 0.85 -1.8 3,645,486 - Shewana3_3041 0.86 +0.7 3,645,600 + -0.3 3,645,600 + -0.1 3,645,600 + -1.7 3,645,608 - +0.2 3,645,633 - -0.8 3,645,682 - +0.3 3,645,740 - -0.3 3,645,742 - +0.6
Or see this region's nucleotide sequence