Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2903

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2901 and Shewana3_2902 are separated by 147 nucleotidesShewana3_2902 and ppnK are separated by 48 nucleotidesppnK and Shewana3_2904 are separated by 750 nucleotides Shewana3_2901: Shewana3_2901 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,469,970 to 3,471,838 _2901 Shewana3_2902: Shewana3_2902 - GrpE protein (RefSeq), at 3,471,986 to 3,472,606 _2902 Shewana3_2903: ppnK - inorganic polyphosphate/ATP-NAD kinase (RefSeq), at 3,472,655 to 3,473,584 ppnK Shewana3_2904: Shewana3_2904 - propionate/L-lactate/D-lactate transporter (from data), at 3,474,335 to 3,475,978 _2904 Position (kb) 3472 3473 3474Strain fitness (log2 ratio) -3 -2 -1 0 1at 3471.858 kb on + strandat 3471.868 kb on + strandat 3472.681 kb on + strandat 3473.602 kb on + strandat 3473.618 kb on + strandat 3473.641 kb on + strandat 3473.649 kb on - strandat 3473.649 kb on - strandat 3473.649 kb on - strandat 3473.649 kb on - strandat 3473.691 kb on + strandat 3473.691 kb on + strandat 3473.699 kb on - strandat 3473.699 kb on - strandat 3473.699 kb on - strandat 3473.813 kb on + strandat 3473.821 kb on - strandat 3473.867 kb on - strandat 3473.890 kb on - strandat 3474.119 kb on + strandat 3474.125 kb on - strandat 3474.207 kb on + strandat 3474.378 kb on + strandat 3474.415 kb on + strandat 3474.415 kb on + strandat 3474.415 kb on + strandat 3474.415 kb on + strandat 3474.433 kb on - strandat 3474.488 kb on + strandat 3474.565 kb on + strand, within Shewana3_2904at 3474.573 kb on - strand, within Shewana3_2904

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,471,858 + +0.3
3,471,868 + +1.1
3,472,681 + +1.5
3,473,602 + +0.6
3,473,618 + +1.6
3,473,641 + +0.8
3,473,649 - -0.3
3,473,649 - +0.5
3,473,649 - +0.5
3,473,649 - +0.0
3,473,691 + -3.3
3,473,691 + +0.5
3,473,699 - +0.0
3,473,699 - +0.3
3,473,699 - +0.1
3,473,813 + -0.0
3,473,821 - +0.2
3,473,867 - -1.0
3,473,890 - -0.0
3,474,119 + -0.5
3,474,125 - -2.4
3,474,207 + +0.4
3,474,378 + -1.3
3,474,415 + -1.5
3,474,415 + -1.1
3,474,415 + -1.0
3,474,415 + -2.3
3,474,433 - -2.4
3,474,488 + -2.7
3,474,565 + Shewana3_2904 0.14 -1.5
3,474,573 - Shewana3_2904 0.14 -1.5

Or see this region's nucleotide sequence