Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2901 and Shewana3_2902 are separated by 147 nucleotides Shewana3_2902 and ppnK are separated by 48 nucleotides ppnK and Shewana3_2904 are separated by 750 nucleotides
Shewana3_2901: Shewana3_2901 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,469,970 to 3,471,838
_2901
Shewana3_2902: Shewana3_2902 - GrpE protein (RefSeq), at 3,471,986 to 3,472,606
_2902
Shewana3_2903: ppnK - inorganic polyphosphate/ATP-NAD kinase (RefSeq), at 3,472,655 to 3,473,584
ppnK
Shewana3_2904: Shewana3_2904 - propionate/L-lactate/D-lactate transporter (from data) , at 3,474,335 to 3,475,978
_2904
Position (kb)
3472
3473
3474 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3471.858 kb on + strand at 3471.868 kb on + strand at 3472.681 kb on + strand at 3473.602 kb on + strand at 3473.618 kb on + strand at 3473.641 kb on + strand at 3473.649 kb on - strand at 3473.649 kb on - strand at 3473.649 kb on - strand at 3473.649 kb on - strand at 3473.691 kb on + strand at 3473.691 kb on + strand at 3473.699 kb on - strand at 3473.699 kb on - strand at 3473.699 kb on - strand at 3473.813 kb on + strand at 3473.821 kb on - strand at 3473.867 kb on - strand at 3473.890 kb on - strand at 3474.119 kb on + strand at 3474.125 kb on - strand at 3474.207 kb on + strand at 3474.378 kb on + strand at 3474.415 kb on + strand at 3474.415 kb on + strand at 3474.415 kb on + strand at 3474.415 kb on + strand at 3474.433 kb on - strand at 3474.488 kb on + strand at 3474.565 kb on + strand, within Shewana3_2904 at 3474.573 kb on - strand, within Shewana3_2904
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,471,858 + +0.3 3,471,868 + +1.1 3,472,681 + +1.5 3,473,602 + +0.6 3,473,618 + +1.6 3,473,641 + +0.8 3,473,649 - -0.3 3,473,649 - +0.5 3,473,649 - +0.5 3,473,649 - +0.0 3,473,691 + -3.3 3,473,691 + +0.5 3,473,699 - +0.0 3,473,699 - +0.3 3,473,699 - +0.1 3,473,813 + -0.0 3,473,821 - +0.2 3,473,867 - -1.0 3,473,890 - -0.0 3,474,119 + -0.5 3,474,125 - -2.4 3,474,207 + +0.4 3,474,378 + -1.3 3,474,415 + -1.5 3,474,415 + -1.1 3,474,415 + -1.0 3,474,415 + -2.3 3,474,433 - -2.4 3,474,488 + -2.7 3,474,565 + Shewana3_2904 0.14 -1.5 3,474,573 - Shewana3_2904 0.14 -1.5
Or see this region's nucleotide sequence