Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2784

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2783 and Shewana3_2784 are separated by 73 nucleotidesShewana3_2784 and Shewana3_2785 are separated by 93 nucleotidesShewana3_2785 and Shewana3_2786 are separated by 118 nucleotides Shewana3_2783: Shewana3_2783 - UDP-galactose 4-epimerase (RefSeq), at 3,322,413 to 3,323,426 _2783 Shewana3_2784: Shewana3_2784 - ferredoxin-type protein NapF (RefSeq), at 3,323,500 to 3,323,985 _2784 Shewana3_2785: Shewana3_2785 - hypothetical protein (RefSeq), at 3,324,079 to 3,324,522 _2785 Shewana3_2786: Shewana3_2786 - LysR family transcriptional regulator (RefSeq), at 3,324,641 to 3,325,654 _2786 Position (kb) 3323 3324Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3322.658 kb on + strand, within Shewana3_2783at 3322.791 kb on + strand, within Shewana3_2783at 3323.199 kb on + strand, within Shewana3_2783at 3323.248 kb on + strand, within Shewana3_2783at 3323.525 kb on + strandat 3323.533 kb on + strandat 3323.727 kb on + strand, within Shewana3_2784at 3323.735 kb on - strand, within Shewana3_2784at 3324.007 kb on - strandat 3324.019 kb on + strandat 3324.031 kb on + strandat 3324.106 kb on - strandat 3324.129 kb on - strand, within Shewana3_2785at 3324.214 kb on - strand, within Shewana3_2785at 3324.214 kb on - strand, within Shewana3_2785at 3324.330 kb on + strand, within Shewana3_2785at 3324.408 kb on + strand, within Shewana3_2785at 3324.538 kb on + strandat 3324.539 kb on + strandat 3324.555 kb on - strandat 3324.608 kb on - strandat 3324.687 kb on - strandat 3324.717 kb on + strandat 3324.717 kb on + strandat 3324.717 kb on + strandat 3324.717 kb on + strandat 3324.717 kb on + strandat 3324.818 kb on + strand, within Shewana3_2786at 3324.890 kb on + strand, within Shewana3_2786

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,322,658 + Shewana3_2783 0.24 -3.8
3,322,791 + Shewana3_2783 0.37 -5.4
3,323,199 + Shewana3_2783 0.78 -5.0
3,323,248 + Shewana3_2783 0.82 -2.7
3,323,525 + +0.4
3,323,533 + -0.9
3,323,727 + Shewana3_2784 0.47 +0.4
3,323,735 - Shewana3_2784 0.48 +0.3
3,324,007 - +0.0
3,324,019 + -0.8
3,324,031 + -0.1
3,324,106 - +0.4
3,324,129 - Shewana3_2785 0.11 -0.2
3,324,214 - Shewana3_2785 0.30 -0.2
3,324,214 - Shewana3_2785 0.30 -1.0
3,324,330 + Shewana3_2785 0.57 +0.5
3,324,408 + Shewana3_2785 0.74 +0.3
3,324,538 + +0.4
3,324,539 + +0.3
3,324,555 - -0.8
3,324,608 - +0.2
3,324,687 - +1.9
3,324,717 + +0.4
3,324,717 + +0.2
3,324,717 + -1.0
3,324,717 + -0.8
3,324,717 + +0.8
3,324,818 + Shewana3_2786 0.17 -0.1
3,324,890 + Shewana3_2786 0.25 +0.8

Or see this region's nucleotide sequence