Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2775

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2773 and Shewana3_2774 are separated by 84 nucleotidesShewana3_2774 and Shewana3_2775 are separated by 84 nucleotidesShewana3_2775 and Shewana3_2776 are separated by 458 nucleotides Shewana3_2773: Shewana3_2773 - hypothetical protein (RefSeq), at 3,312,890 to 3,313,324 _2773 Shewana3_2774: Shewana3_2774 - short chain dehydrogenase family protein (RefSeq), at 3,313,409 to 3,314,185 _2774 Shewana3_2775: Shewana3_2775 - outer membrane protein W (RefSeq), at 3,314,270 to 3,314,926 _2775 Shewana3_2776: Shewana3_2776 - hypothetical protein (RefSeq), at 3,315,385 to 3,315,972 _2776 Position (kb) 3314 3315Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3313.306 kb on + strandat 3313.314 kb on - strandat 3313.321 kb on - strandat 3313.676 kb on + strand, within Shewana3_2774at 3313.713 kb on + strand, within Shewana3_2774at 3313.767 kb on + strand, within Shewana3_2774at 3313.892 kb on - strand, within Shewana3_2774at 3313.925 kb on - strand, within Shewana3_2774at 3314.185 kb on + strandat 3314.277 kb on + strandat 3314.310 kb on - strandat 3314.447 kb on + strand, within Shewana3_2775at 3314.447 kb on + strand, within Shewana3_2775at 3314.465 kb on - strand, within Shewana3_2775at 3314.600 kb on + strand, within Shewana3_2775at 3314.600 kb on + strand, within Shewana3_2775at 3314.659 kb on - strand, within Shewana3_2775at 3315.074 kb on + strandat 3315.144 kb on + strandat 3315.345 kb on + strandat 3315.374 kb on + strandat 3315.796 kb on + strand, within Shewana3_2776at 3315.798 kb on + strand, within Shewana3_2776at 3315.806 kb on - strand, within Shewana3_2776at 3315.806 kb on - strand, within Shewana3_2776at 3315.913 kb on - strand, within Shewana3_2776at 3315.924 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
3,313,306 + -5.0
3,313,314 - +1.2
3,313,321 - +0.1
3,313,676 + Shewana3_2774 0.34 +0.5
3,313,713 + Shewana3_2774 0.39 -0.4
3,313,767 + Shewana3_2774 0.46 -1.5
3,313,892 - Shewana3_2774 0.62 -0.9
3,313,925 - Shewana3_2774 0.66 +0.5
3,314,185 + -0.8
3,314,277 + -0.8
3,314,310 - -0.1
3,314,447 + Shewana3_2775 0.27 +1.9
3,314,447 + Shewana3_2775 0.27 +0.6
3,314,465 - Shewana3_2775 0.30 +0.9
3,314,600 + Shewana3_2775 0.50 +0.8
3,314,600 + Shewana3_2775 0.50 +0.9
3,314,659 - Shewana3_2775 0.59 -0.7
3,315,074 + +0.6
3,315,144 + -0.1
3,315,345 + -2.0
3,315,374 + -0.7
3,315,796 + Shewana3_2776 0.70 +0.3
3,315,798 + Shewana3_2776 0.70 +0.3
3,315,806 - Shewana3_2776 0.72 +0.5
3,315,806 - Shewana3_2776 0.72 -0.1
3,315,913 - Shewana3_2776 0.90 +0.0
3,315,924 - +0.2

Or see this region's nucleotide sequence