Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2607

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2606 and Shewana3_2607 are separated by 98 nucleotidesShewana3_2607 and Shewana3_2608 are separated by 57 nucleotidesShewana3_2608 and Shewana3_2609 are separated by 125 nucleotides Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968 _2606 Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504 _2607 Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071 _2608 Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655 _2609 Position (kb) 3112 3113Strain fitness (log2 ratio) -1 0 1at 3111.988 kb on - strandat 3112.052 kb on + strandat 3112.163 kb on - strand, within Shewana3_2607at 3112.231 kb on - strand, within Shewana3_2607at 3112.301 kb on + strand, within Shewana3_2607at 3112.552 kb on + strandat 3112.560 kb on - strandat 3112.560 kb on - strandat 3113.371 kb on + strand, within Shewana3_2609

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,111,988 - +0.2
3,112,052 + +0.1
3,112,163 - Shewana3_2607 0.22 -1.6
3,112,231 - Shewana3_2607 0.37 -0.8
3,112,301 + Shewana3_2607 0.53 -0.2
3,112,552 + +0.6
3,112,560 - +0.2
3,112,560 - +0.4
3,113,371 + Shewana3_2609 0.38 +0.5

Or see this region's nucleotide sequence