Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2206

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2205 and Shewana3_2206 overlap by 1 nucleotidesShewana3_2206 and Shewana3_2207 are separated by 630 nucleotides Shewana3_2205: Shewana3_2205 - AraC family transcriptional regulator (RefSeq), at 2,646,442 to 2,647,620 _2205 Shewana3_2206: Shewana3_2206 - diguanylate cyclase (RefSeq), at 2,647,620 to 2,648,585 _2206 Shewana3_2207: Shewana3_2207 - TonB-dependent receptor (RefSeq), at 2,649,216 to 2,652,050 _2207 Position (kb) 2647 2648 2649Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2646.697 kb on + strand, within Shewana3_2205at 2646.697 kb on + strand, within Shewana3_2205at 2646.705 kb on - strand, within Shewana3_2205at 2646.817 kb on + strand, within Shewana3_2205at 2646.992 kb on + strand, within Shewana3_2205at 2647.092 kb on - strand, within Shewana3_2205at 2647.170 kb on + strand, within Shewana3_2205at 2647.170 kb on + strand, within Shewana3_2205at 2647.559 kb on - strandat 2647.559 kb on - strandat 2647.661 kb on - strandat 2647.952 kb on + strand, within Shewana3_2206at 2648.126 kb on + strand, within Shewana3_2206at 2648.134 kb on - strand, within Shewana3_2206at 2648.229 kb on + strand, within Shewana3_2206at 2648.280 kb on - strand, within Shewana3_2206at 2648.284 kb on + strand, within Shewana3_2206at 2648.318 kb on + strand, within Shewana3_2206at 2648.318 kb on + strand, within Shewana3_2206at 2648.479 kb on + strand, within Shewana3_2206at 2648.487 kb on - strand, within Shewana3_2206at 2648.534 kb on + strandat 2648.606 kb on - strandat 2649.081 kb on - strandat 2649.139 kb on - strandat 2649.185 kb on - strandat 2649.348 kb on + strandat 2649.454 kb on + strandat 2649.536 kb on + strand, within Shewana3_2207at 2649.544 kb on - strand, within Shewana3_2207at 2649.570 kb on - strand, within Shewana3_2207

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,646,697 + Shewana3_2205 0.22 +0.4
2,646,697 + Shewana3_2205 0.22 -0.6
2,646,705 - Shewana3_2205 0.22 -4.1
2,646,817 + Shewana3_2205 0.32 -0.3
2,646,992 + Shewana3_2205 0.47 +0.4
2,647,092 - Shewana3_2205 0.55 +0.3
2,647,170 + Shewana3_2205 0.62 +0.3
2,647,170 + Shewana3_2205 0.62 -1.3
2,647,559 - +1.0
2,647,559 - +0.4
2,647,661 - +1.8
2,647,952 + Shewana3_2206 0.34 -1.3
2,648,126 + Shewana3_2206 0.52 +0.4
2,648,134 - Shewana3_2206 0.53 +0.1
2,648,229 + Shewana3_2206 0.63 +0.0
2,648,280 - Shewana3_2206 0.68 -0.2
2,648,284 + Shewana3_2206 0.69 -1.2
2,648,318 + Shewana3_2206 0.72 -0.9
2,648,318 + Shewana3_2206 0.72 -2.8
2,648,479 + Shewana3_2206 0.89 -2.3
2,648,487 - Shewana3_2206 0.90 +0.2
2,648,534 + -1.0
2,648,606 - -1.3
2,649,081 - +0.6
2,649,139 - -0.2
2,649,185 - -0.4
2,649,348 + -1.3
2,649,454 + -1.2
2,649,536 + Shewana3_2207 0.11 -0.2
2,649,544 - Shewana3_2207 0.12 -0.1
2,649,570 - Shewana3_2207 0.12 +0.9

Or see this region's nucleotide sequence