Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2131 and Shewana3_2132 are separated by 162 nucleotides Shewana3_2132 and Shewana3_2133 are separated by 277 nucleotides Shewana3_2133 and Shewana3_2134 are separated by 118 nucleotides
Shewana3_2131: Shewana3_2131 - dehydrogenase, E1 component (RefSeq), at 2,556,482 to 2,557,660
_2131
Shewana3_2132: Shewana3_2132 - succinylglutamate desuccinylase (RefSeq), at 2,557,823 to 2,558,857
_2132
Shewana3_2133: Shewana3_2133 - peptide methionine sulfoxide reductase (RefSeq), at 2,559,135 to 2,559,614
_2133
Shewana3_2134: Shewana3_2134 - phosphoglucomutase (RefSeq), at 2,559,733 to 2,561,385
_2134
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 2556.918 kb on - strand, within Shewana3_2131 at 2557.072 kb on - strand, within Shewana3_2131 at 2557.134 kb on - strand, within Shewana3_2131 at 2557.157 kb on + strand, within Shewana3_2131 at 2557.317 kb on + strand, within Shewana3_2131 at 2557.325 kb on - strand, within Shewana3_2131 at 2557.511 kb on + strand, within Shewana3_2131 at 2557.646 kb on - strand at 2557.772 kb on + strand at 2557.831 kb on + strand at 2558.090 kb on + strand, within Shewana3_2132 at 2558.169 kb on + strand, within Shewana3_2132 at 2558.177 kb on - strand, within Shewana3_2132 at 2558.213 kb on - strand, within Shewana3_2132 at 2558.318 kb on - strand, within Shewana3_2132 at 2558.472 kb on + strand, within Shewana3_2132 at 2558.534 kb on + strand, within Shewana3_2132 at 2558.694 kb on + strand, within Shewana3_2132 at 2558.803 kb on - strand at 2559.042 kb on + strand at 2559.210 kb on + strand, within Shewana3_2133 at 2559.506 kb on - strand, within Shewana3_2133 at 2559.561 kb on + strand, within Shewana3_2133
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,556,918 - Shewana3_2131 0.37 +1.7 2,557,072 - Shewana3_2131 0.50 +1.7 2,557,134 - Shewana3_2131 0.55 +2.2 2,557,157 + Shewana3_2131 0.57 +2.3 2,557,317 + Shewana3_2131 0.71 -0.1 2,557,325 - Shewana3_2131 0.72 +1.6 2,557,511 + Shewana3_2131 0.87 +1.1 2,557,646 - +0.7 2,557,772 + +2.4 2,557,831 + +0.2 2,558,090 + Shewana3_2132 0.26 -2.3 2,558,169 + Shewana3_2132 0.33 -5.7 2,558,177 - Shewana3_2132 0.34 -7.0 2,558,213 - Shewana3_2132 0.38 -7.1 2,558,318 - Shewana3_2132 0.48 -4.3 2,558,472 + Shewana3_2132 0.63 -5.8 2,558,534 + Shewana3_2132 0.69 -3.6 2,558,694 + Shewana3_2132 0.84 -5.7 2,558,803 - -5.5 2,559,042 + +0.5 2,559,210 + Shewana3_2133 0.16 -1.0 2,559,506 - Shewana3_2133 0.77 -0.8 2,559,561 + Shewana3_2133 0.89 +0.6
Or see this region's nucleotide sequence