Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1754

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1753 and infA are separated by 103 nucleotidesinfA and Shewana3_1755 are separated by 82 nucleotidesShewana3_1755 and aat overlap by 11 nucleotides Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277 _1753 Shewana3_1754: infA - translation initiation factor IF-1 (RefSeq), at 2,069,381 to 2,069,599 infA Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398 _1755 Shewana3_1756: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 2,070,388 to 2,071,098 aat Position (kb) 2069 2070Strain fitness (log2 ratio) -2 -1 0 1at 2068.432 kb on - strand, within Shewana3_1753at 2068.471 kb on + strand, within Shewana3_1753at 2068.474 kb on + strand, within Shewana3_1753at 2068.499 kb on + strand, within Shewana3_1753at 2068.621 kb on + strand, within Shewana3_1753at 2068.865 kb on + strand, within Shewana3_1753at 2069.714 kb on - strandat 2069.744 kb on - strandat 2069.846 kb on + strand, within Shewana3_1755at 2069.918 kb on - strand, within Shewana3_1755at 2070.092 kb on + strand, within Shewana3_1755at 2070.092 kb on + strand, within Shewana3_1755at 2070.294 kb on - strand, within Shewana3_1755at 2070.451 kb on - strandat 2070.451 kb on - strandat 2070.463 kb on - strand, within aatat 2070.510 kb on - strand, within aat

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,068,432 - Shewana3_1753 0.63 -2.2
2,068,471 + Shewana3_1753 0.64 -1.6
2,068,474 + Shewana3_1753 0.65 -2.0
2,068,499 + Shewana3_1753 0.66 -2.5
2,068,621 + Shewana3_1753 0.71 -1.6
2,068,865 + Shewana3_1753 0.82 -2.2
2,069,714 - +0.2
2,069,744 - +0.4
2,069,846 + Shewana3_1755 0.23 +1.2
2,069,918 - Shewana3_1755 0.33 +0.5
2,070,092 + Shewana3_1755 0.57 -1.1
2,070,092 + Shewana3_1755 0.57 -0.5
2,070,294 - Shewana3_1755 0.85 +0.2
2,070,451 - -0.1
2,070,451 - -1.8
2,070,463 - aat Shewana3_1756 0.11 +0.8
2,070,510 - aat Shewana3_1756 0.17 +0.6

Or see this region's nucleotide sequence