Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1733

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysB and Shewana3_1732 are separated by 81 nucleotidesShewana3_1732 and Shewana3_1733 are separated by 221 nucleotidesShewana3_1733 and Shewana3_1734 are separated by 150 nucleotides Shewana3_1731: cysB - transcriptional regulator CysB (RefSeq), at 2,039,604 to 2,040,578 cysB Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322 _1732 Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975 _1733 Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190 _1734 Position (kb) 2041 2042Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2040.828 kb on + strand, within Shewana3_1732at 2040.846 kb on - strand, within Shewana3_1732at 2040.965 kb on - strand, within Shewana3_1732at 2041.079 kb on + strand, within Shewana3_1732at 2041.087 kb on - strand, within Shewana3_1732at 2041.179 kb on + strand, within Shewana3_1732at 2041.511 kb on - strandat 2041.680 kb on + strand, within Shewana3_1733at 2041.829 kb on + strand, within Shewana3_1733at 2041.847 kb on + strand, within Shewana3_1733at 2041.932 kb on - strandat 2041.990 kb on - strandat 2042.168 kb on - strandat 2042.421 kb on - strand, within Shewana3_1734at 2042.651 kb on + strand, within Shewana3_1734at 2042.691 kb on - strand, within Shewana3_1734at 2042.710 kb on + strand, within Shewana3_1734at 2042.951 kb on + strand, within Shewana3_1734

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,040,828 + Shewana3_1732 0.25 -0.8
2,040,846 - Shewana3_1732 0.28 -1.2
2,040,965 - Shewana3_1732 0.46 -0.7
2,041,079 + Shewana3_1732 0.63 -0.9
2,041,087 - Shewana3_1732 0.64 -1.1
2,041,179 + Shewana3_1732 0.78 +0.2
2,041,511 - -0.1
2,041,680 + Shewana3_1733 0.31 +0.2
2,041,829 + Shewana3_1733 0.66 -0.0
2,041,847 + Shewana3_1733 0.70 +0.2
2,041,932 - +0.1
2,041,990 - +0.3
2,042,168 - -4.4
2,042,421 - Shewana3_1734 0.28 -3.0
2,042,651 + Shewana3_1734 0.49 -3.4
2,042,691 - Shewana3_1734 0.53 -2.5
2,042,710 + Shewana3_1734 0.55 -1.9
2,042,951 + Shewana3_1734 0.77 -1.9

Or see this region's nucleotide sequence