Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1478 and truA are separated by 103 nucleotides truA and Shewana3_1480 are separated by 51 nucleotides Shewana3_1480 and Shewana3_1481 overlap by 8 nucleotides Shewana3_1481 and Shewana3_1482 are separated by 110 nucleotides
Shewana3_1478: Shewana3_1478 - hypothetical protein (RefSeq), at 1,718,719 to 1,722,066
_1478
Shewana3_1479: truA - tRNA pseudouridine synthase A (RefSeq), at 1,722,170 to 1,722,955
truA
Shewana3_1480: Shewana3_1480 - FolC bifunctional protein (RefSeq), at 1,723,007 to 1,724,305
_1480
Shewana3_1481: Shewana3_1481 - sporulation domain-containing protein (RefSeq), at 1,724,298 to 1,725,122
_1481
Shewana3_1482: Shewana3_1482 - colicin V production protein (RefSeq), at 1,725,233 to 1,725,721
_1482
Position (kb) 1723
1724
1725 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1722.336 kb on + strand, within truA at 1722.405 kb on + strand, within truA at 1722.484 kb on + strand, within truA at 1722.807 kb on + strand, within truA at 1722.858 kb on + strand, within truA at 1722.865 kb on + strand, within truA at 1723.001 kb on + strand at 1724.555 kb on + strand, within Shewana3_1481 at 1724.716 kb on + strand, within Shewana3_1481 at 1725.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,722,336 + truA Shewana3_1479 0.21 -2.9 1,722,405 + truA Shewana3_1479 0.30 -5.6 1,722,484 + truA Shewana3_1479 0.40 -4.6 1,722,807 + truA Shewana3_1479 0.81 -4.0 1,722,858 + truA Shewana3_1479 0.88 -5.3 1,722,865 + truA Shewana3_1479 0.88 -4.8 1,723,001 + +0.0 1,724,555 + Shewana3_1481 0.31 +0.9 1,724,716 + Shewana3_1481 0.51 +1.3 1,725,210 + -0.5
Or see this region's nucleotide sequence