Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1456

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1455 and Shewana3_1456 overlap by 1 nucleotidesShewana3_1456 and Shewana3_1457 overlap by 7 nucleotidesShewana3_1457 and Shewana3_1458 are separated by 63 nucleotides Shewana3_1455: Shewana3_1455 - TPR repeat-containing protein (RefSeq), at 1,687,207 to 1,689,279 _1455 Shewana3_1456: Shewana3_1456 - von Willebrand factor, type A (RefSeq), at 1,689,279 to 1,690,295 _1456 Shewana3_1457: Shewana3_1457 - hypothetical protein (RefSeq), at 1,690,289 to 1,690,882 _1457 Shewana3_1458: Shewana3_1458 - hypothetical protein (RefSeq), at 1,690,946 to 1,691,914 _1458 Position (kb) 1689 1690 1691Strain fitness (log2 ratio) -2 -1 0 1at 1688.319 kb on + strand, within Shewana3_1455at 1688.319 kb on + strand, within Shewana3_1455at 1688.342 kb on - strand, within Shewana3_1455at 1688.350 kb on + strand, within Shewana3_1455at 1688.358 kb on - strand, within Shewana3_1455at 1688.909 kb on - strand, within Shewana3_1455at 1689.070 kb on - strand, within Shewana3_1455at 1689.299 kb on + strandat 1689.375 kb on - strandat 1689.377 kb on + strandat 1689.629 kb on + strand, within Shewana3_1456at 1689.730 kb on + strand, within Shewana3_1456at 1689.738 kb on - strand, within Shewana3_1456at 1689.954 kb on + strand, within Shewana3_1456at 1689.957 kb on - strand, within Shewana3_1456at 1690.189 kb on - strand, within Shewana3_1456at 1690.218 kb on - strandat 1690.377 kb on - strand, within Shewana3_1457at 1690.441 kb on + strand, within Shewana3_1457at 1690.741 kb on - strand, within Shewana3_1457at 1690.753 kb on - strand, within Shewana3_1457at 1690.764 kb on + strand, within Shewana3_1457at 1690.772 kb on - strand, within Shewana3_1457at 1690.782 kb on + strand, within Shewana3_1457at 1690.893 kb on + strandat 1690.923 kb on - strandat 1690.976 kb on + strandat 1690.976 kb on + strandat 1690.984 kb on - strandat 1691.059 kb on + strand, within Shewana3_1458at 1691.180 kb on - strand, within Shewana3_1458

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,688,319 + Shewana3_1455 0.54 -0.7
1,688,319 + Shewana3_1455 0.54 +0.6
1,688,342 - Shewana3_1455 0.55 -0.2
1,688,350 + Shewana3_1455 0.55 +0.7
1,688,358 - Shewana3_1455 0.56 +0.9
1,688,909 - Shewana3_1455 0.82 -0.4
1,689,070 - Shewana3_1455 0.90 +1.0
1,689,299 + -1.1
1,689,375 - +0.7
1,689,377 + +0.5
1,689,629 + Shewana3_1456 0.34 -0.7
1,689,730 + Shewana3_1456 0.44 +0.6
1,689,738 - Shewana3_1456 0.45 -0.3
1,689,954 + Shewana3_1456 0.66 +0.6
1,689,957 - Shewana3_1456 0.67 +1.0
1,690,189 - Shewana3_1456 0.89 +0.5
1,690,218 - +0.4
1,690,377 - Shewana3_1457 0.15 -1.0
1,690,441 + Shewana3_1457 0.26 +1.0
1,690,741 - Shewana3_1457 0.76 +0.7
1,690,753 - Shewana3_1457 0.78 -0.2
1,690,764 + Shewana3_1457 0.80 +1.7
1,690,772 - Shewana3_1457 0.81 -2.4
1,690,782 + Shewana3_1457 0.83 -0.2
1,690,893 + +0.8
1,690,923 - +0.2
1,690,976 + -0.6
1,690,976 + -0.0
1,690,984 - +0.5
1,691,059 + Shewana3_1458 0.12 +0.5
1,691,180 - Shewana3_1458 0.24 +0.3

Or see this region's nucleotide sequence