Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1455

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1454 and Shewana3_1455 overlap by 7 nucleotidesShewana3_1455 and Shewana3_1456 overlap by 1 nucleotides Shewana3_1454: Shewana3_1454 - hypothetical protein (RefSeq), at 1,685,552 to 1,687,213 _1454 Shewana3_1455: Shewana3_1455 - TPR repeat-containing protein (RefSeq), at 1,687,207 to 1,689,279 _1455 Shewana3_1456: Shewana3_1456 - von Willebrand factor, type A (RefSeq), at 1,689,279 to 1,690,295 _1456 Position (kb) 1687 1688 1689 1690Strain fitness (log2 ratio) -1 0 1at 1686.241 kb on - strand, within Shewana3_1454at 1686.274 kb on - strand, within Shewana3_1454at 1686.289 kb on - strand, within Shewana3_1454at 1686.612 kb on - strand, within Shewana3_1454at 1686.659 kb on + strand, within Shewana3_1454at 1686.907 kb on - strand, within Shewana3_1454at 1686.933 kb on - strand, within Shewana3_1454at 1687.041 kb on - strand, within Shewana3_1454at 1687.061 kb on + strandat 1687.296 kb on - strandat 1687.296 kb on - strandat 1687.463 kb on + strand, within Shewana3_1455at 1687.613 kb on + strand, within Shewana3_1455at 1687.659 kb on + strand, within Shewana3_1455at 1687.682 kb on - strand, within Shewana3_1455at 1687.762 kb on + strand, within Shewana3_1455at 1688.114 kb on + strand, within Shewana3_1455at 1688.122 kb on - strand, within Shewana3_1455at 1688.124 kb on + strand, within Shewana3_1455at 1688.199 kb on - strand, within Shewana3_1455at 1688.242 kb on + strand, within Shewana3_1455at 1688.250 kb on - strand, within Shewana3_1455at 1688.264 kb on + strand, within Shewana3_1455at 1688.319 kb on + strand, within Shewana3_1455at 1688.319 kb on + strand, within Shewana3_1455at 1688.342 kb on - strand, within Shewana3_1455at 1688.350 kb on + strand, within Shewana3_1455at 1688.358 kb on - strand, within Shewana3_1455at 1688.909 kb on - strand, within Shewana3_1455at 1689.070 kb on - strand, within Shewana3_1455at 1689.299 kb on + strandat 1689.375 kb on - strandat 1689.377 kb on + strandat 1689.629 kb on + strand, within Shewana3_1456at 1689.730 kb on + strand, within Shewana3_1456at 1689.738 kb on - strand, within Shewana3_1456at 1689.954 kb on + strand, within Shewana3_1456at 1689.957 kb on - strand, within Shewana3_1456at 1690.189 kb on - strand, within Shewana3_1456at 1690.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,686,241 - Shewana3_1454 0.41 +0.6
1,686,274 - Shewana3_1454 0.43 -0.2
1,686,289 - Shewana3_1454 0.44 +0.5
1,686,612 - Shewana3_1454 0.64 +1.1
1,686,659 + Shewana3_1454 0.67 +0.2
1,686,907 - Shewana3_1454 0.82 +0.5
1,686,933 - Shewana3_1454 0.83 +0.9
1,687,041 - Shewana3_1454 0.90 +0.7
1,687,061 + +1.0
1,687,296 - -0.8
1,687,296 - +0.7
1,687,463 + Shewana3_1455 0.12 -0.4
1,687,613 + Shewana3_1455 0.20 -0.5
1,687,659 + Shewana3_1455 0.22 -0.6
1,687,682 - Shewana3_1455 0.23 +1.0
1,687,762 + Shewana3_1455 0.27 -1.2
1,688,114 + Shewana3_1455 0.44 +0.3
1,688,122 - Shewana3_1455 0.44 -0.0
1,688,124 + Shewana3_1455 0.44 +0.5
1,688,199 - Shewana3_1455 0.48 +0.5
1,688,242 + Shewana3_1455 0.50 +0.6
1,688,250 - Shewana3_1455 0.50 +0.8
1,688,264 + Shewana3_1455 0.51 +0.6
1,688,319 + Shewana3_1455 0.54 -0.7
1,688,319 + Shewana3_1455 0.54 +0.6
1,688,342 - Shewana3_1455 0.55 -0.2
1,688,350 + Shewana3_1455 0.55 +0.7
1,688,358 - Shewana3_1455 0.56 +0.9
1,688,909 - Shewana3_1455 0.82 -0.4
1,689,070 - Shewana3_1455 0.90 +1.0
1,689,299 + -1.1
1,689,375 - +0.7
1,689,377 + +0.5
1,689,629 + Shewana3_1456 0.34 -0.7
1,689,730 + Shewana3_1456 0.44 +0.6
1,689,738 - Shewana3_1456 0.45 -0.3
1,689,954 + Shewana3_1456 0.66 +0.6
1,689,957 - Shewana3_1456 0.67 +1.0
1,690,189 - Shewana3_1456 0.89 +0.5
1,690,218 - +0.4

Or see this region's nucleotide sequence