Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1453

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1451 and Shewana3_1452 are separated by 158 nucleotidesShewana3_1452 and Shewana3_1453 overlap by 8 nucleotidesShewana3_1453 and Shewana3_1454 are separated by 93 nucleotides Shewana3_1451: Shewana3_1451 - sodium/proline symporter (RefSeq), at 1,682,588 to 1,684,039 _1451 Shewana3_1452: Shewana3_1452 - hypothetical protein (RefSeq), at 1,684,198 to 1,684,902 _1452 Shewana3_1453: Shewana3_1453 - RNA polymerase sigma factor (RefSeq), at 1,684,895 to 1,685,458 _1453 Shewana3_1454: Shewana3_1454 - hypothetical protein (RefSeq), at 1,685,552 to 1,687,213 _1454 Position (kb) 1684 1685 1686Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1684.270 kb on - strand, within Shewana3_1452at 1684.335 kb on - strand, within Shewana3_1452at 1684.660 kb on - strand, within Shewana3_1452at 1684.686 kb on + strand, within Shewana3_1452at 1684.760 kb on - strand, within Shewana3_1452at 1684.996 kb on - strand, within Shewana3_1453at 1685.044 kb on + strand, within Shewana3_1453at 1685.046 kb on + strand, within Shewana3_1453at 1685.067 kb on + strand, within Shewana3_1453at 1685.148 kb on - strand, within Shewana3_1453at 1685.226 kb on + strand, within Shewana3_1453at 1685.226 kb on + strand, within Shewana3_1453at 1685.317 kb on + strand, within Shewana3_1453at 1685.595 kb on + strandat 1685.609 kb on - strandat 1685.701 kb on - strandat 1685.724 kb on - strand, within Shewana3_1454at 1685.762 kb on - strand, within Shewana3_1454at 1685.776 kb on - strand, within Shewana3_1454at 1685.778 kb on + strand, within Shewana3_1454at 1685.839 kb on - strand, within Shewana3_1454at 1685.972 kb on - strand, within Shewana3_1454at 1686.162 kb on - strand, within Shewana3_1454at 1686.241 kb on - strand, within Shewana3_1454at 1686.274 kb on - strand, within Shewana3_1454at 1686.289 kb on - strand, within Shewana3_1454

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,684,270 - Shewana3_1452 0.10 -0.3
1,684,335 - Shewana3_1452 0.19 -0.5
1,684,660 - Shewana3_1452 0.66 -0.9
1,684,686 + Shewana3_1452 0.69 -3.0
1,684,760 - Shewana3_1452 0.80 -5.3
1,684,996 - Shewana3_1453 0.18 -0.7
1,685,044 + Shewana3_1453 0.26 +0.4
1,685,046 + Shewana3_1453 0.27 +0.3
1,685,067 + Shewana3_1453 0.30 +0.7
1,685,148 - Shewana3_1453 0.45 +0.4
1,685,226 + Shewana3_1453 0.59 +0.1
1,685,226 + Shewana3_1453 0.59 +0.2
1,685,317 + Shewana3_1453 0.75 +1.1
1,685,595 + +0.4
1,685,609 - +1.0
1,685,701 - -0.5
1,685,724 - Shewana3_1454 0.10 +1.0
1,685,762 - Shewana3_1454 0.13 +0.7
1,685,776 - Shewana3_1454 0.13 -1.0
1,685,778 + Shewana3_1454 0.14 +0.5
1,685,839 - Shewana3_1454 0.17 +0.5
1,685,972 - Shewana3_1454 0.25 +0.6
1,686,162 - Shewana3_1454 0.37 +0.8
1,686,241 - Shewana3_1454 0.41 +0.6
1,686,274 - Shewana3_1454 0.43 -0.2
1,686,289 - Shewana3_1454 0.44 +0.5

Or see this region's nucleotide sequence