Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1451 and Shewana3_1452 are separated by 158 nucleotides Shewana3_1452 and Shewana3_1453 overlap by 8 nucleotides Shewana3_1453 and Shewana3_1454 are separated by 93 nucleotides
Shewana3_1451: Shewana3_1451 - sodium/proline symporter (RefSeq), at 1,682,588 to 1,684,039
_1451
Shewana3_1452: Shewana3_1452 - hypothetical protein (RefSeq), at 1,684,198 to 1,684,902
_1452
Shewana3_1453: Shewana3_1453 - RNA polymerase sigma factor (RefSeq), at 1,684,895 to 1,685,458
_1453
Shewana3_1454: Shewana3_1454 - hypothetical protein (RefSeq), at 1,685,552 to 1,687,213
_1454
Position (kb)
1684
1685 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1683.437 kb on - strand, within Shewana3_1451 at 1683.548 kb on - strand, within Shewana3_1451 at 1683.548 kb on - strand, within Shewana3_1451 at 1683.712 kb on + strand, within Shewana3_1451 at 1684.270 kb on - strand, within Shewana3_1452 at 1684.335 kb on - strand, within Shewana3_1452 at 1684.660 kb on - strand, within Shewana3_1452 at 1684.686 kb on + strand, within Shewana3_1452 at 1684.760 kb on - strand, within Shewana3_1452 at 1684.996 kb on - strand, within Shewana3_1453 at 1685.044 kb on + strand, within Shewana3_1453 at 1685.046 kb on + strand, within Shewana3_1453 at 1685.067 kb on + strand, within Shewana3_1453 at 1685.148 kb on - strand, within Shewana3_1453 at 1685.226 kb on + strand, within Shewana3_1453 at 1685.226 kb on + strand, within Shewana3_1453 at 1685.317 kb on + strand, within Shewana3_1453 at 1685.595 kb on + strand at 1685.609 kb on - strand at 1685.701 kb on - strand at 1685.724 kb on - strand, within Shewana3_1454 at 1685.762 kb on - strand, within Shewana3_1454 at 1685.776 kb on - strand, within Shewana3_1454 at 1685.778 kb on + strand, within Shewana3_1454 at 1685.839 kb on - strand, within Shewana3_1454
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,683,437 - Shewana3_1451 0.58 -0.2 1,683,548 - Shewana3_1451 0.66 -0.8 1,683,548 - Shewana3_1451 0.66 -0.5 1,683,712 + Shewana3_1451 0.77 +0.2 1,684,270 - Shewana3_1452 0.10 -0.3 1,684,335 - Shewana3_1452 0.19 -0.5 1,684,660 - Shewana3_1452 0.66 -0.9 1,684,686 + Shewana3_1452 0.69 -3.0 1,684,760 - Shewana3_1452 0.80 -5.3 1,684,996 - Shewana3_1453 0.18 -0.7 1,685,044 + Shewana3_1453 0.26 +0.4 1,685,046 + Shewana3_1453 0.27 +0.3 1,685,067 + Shewana3_1453 0.30 +0.7 1,685,148 - Shewana3_1453 0.45 +0.4 1,685,226 + Shewana3_1453 0.59 +0.1 1,685,226 + Shewana3_1453 0.59 +0.2 1,685,317 + Shewana3_1453 0.75 +1.1 1,685,595 + +0.4 1,685,609 - +1.0 1,685,701 - -0.5 1,685,724 - Shewana3_1454 0.10 +1.0 1,685,762 - Shewana3_1454 0.13 +0.7 1,685,776 - Shewana3_1454 0.13 -1.0 1,685,778 + Shewana3_1454 0.14 +0.5 1,685,839 - Shewana3_1454 0.17 +0.5
Or see this region's nucleotide sequence