Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1439 and Shewana3_1440 are separated by 269 nucleotides Shewana3_1440 and Shewana3_1441 are separated by 34 nucleotides Shewana3_1441 and Shewana3_1442 are separated by 86 nucleotides Shewana3_1442 and Shewana3_1443 are separated by 40 nucleotides
Shewana3_1439: Shewana3_1439 - hypothetical protein (RefSeq), at 1,668,865 to 1,669,182
_1439
Shewana3_1440: Shewana3_1440 - rhodanese domain-containing protein (RefSeq), at 1,669,452 to 1,669,811
_1440
Shewana3_1441: Shewana3_1441 - siroheme synthase (RefSeq), at 1,669,846 to 1,670,757
_1441
Shewana3_1442: Shewana3_1442 - YaeQ family protein (RefSeq), at 1,670,844 to 1,671,389
_1442
Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859
_1443
Position (kb)
1669
1670
1671 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1669.109 kb on + strand, within Shewana3_1439 at 1669.332 kb on - strand at 1669.463 kb on - strand at 1669.489 kb on - strand, within Shewana3_1440 at 1669.636 kb on + strand, within Shewana3_1440 at 1669.995 kb on + strand, within Shewana3_1441 at 1670.242 kb on - strand, within Shewana3_1441 at 1670.320 kb on + strand, within Shewana3_1441 at 1670.360 kb on - strand, within Shewana3_1441 at 1670.801 kb on - strand at 1670.847 kb on - strand at 1671.275 kb on - strand, within Shewana3_1442 at 1671.539 kb on + strand at 1671.661 kb on - strand at 1671.712 kb on + strand, within Shewana3_1443 at 1671.712 kb on + strand, within Shewana3_1443
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,669,109 + Shewana3_1439 0.77 -0.6 1,669,332 - -0.7 1,669,463 - -2.8 1,669,489 - Shewana3_1440 0.10 -0.3 1,669,636 + Shewana3_1440 0.51 +0.1 1,669,995 + Shewana3_1441 0.16 -4.8 1,670,242 - Shewana3_1441 0.43 -5.0 1,670,320 + Shewana3_1441 0.52 -7.0 1,670,360 - Shewana3_1441 0.56 -3.5 1,670,801 - +0.4 1,670,847 - +1.1 1,671,275 - Shewana3_1442 0.79 -0.1 1,671,539 + -1.3 1,671,661 - +0.5 1,671,712 + Shewana3_1443 0.12 +0.4 1,671,712 + Shewana3_1443 0.12 +1.0
Or see this region's nucleotide sequence