Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1244 and Shewana3_1245 are separated by 160 nucleotides Shewana3_1245 and Shewana3_1246 overlap by 20 nucleotides Shewana3_1246 and Shewana3_1247 are separated by 25 nucleotides Shewana3_1247 and Shewana3_1248 are separated by 13 nucleotides
Shewana3_1244: Shewana3_1244 - phage integrase family protein (RefSeq), at 1,458,630 to 1,459,829
_1244
Shewana3_1245: Shewana3_1245 - hypothetical protein (RefSeq), at 1,459,990 to 1,460,373
_1245
Shewana3_1246: Shewana3_1246 - transcriptional regulator-like protein (RefSeq), at 1,460,354 to 1,460,659
_1246
Shewana3_1247: Shewana3_1247 - hypothetical protein (RefSeq), at 1,460,685 to 1,461,503
_1247
Shewana3_1248: Shewana3_1248 - hypothetical protein (RefSeq), at 1,461,517 to 1,462,800
_1248
Position (kb)
1460
1461 Strain fitness (log2 ratio)
-2
-1
0
1 at 1459.390 kb on + strand, within Shewana3_1244 at 1459.390 kb on + strand, within Shewana3_1244 at 1459.453 kb on - strand, within Shewana3_1244 at 1459.563 kb on - strand, within Shewana3_1244 at 1459.570 kb on - strand, within Shewana3_1244 at 1459.798 kb on - strand at 1459.907 kb on + strand at 1460.157 kb on - strand, within Shewana3_1245 at 1460.854 kb on - strand, within Shewana3_1247 at 1460.982 kb on - strand, within Shewana3_1247 at 1461.091 kb on - strand, within Shewana3_1247 at 1461.225 kb on - strand, within Shewana3_1247 at 1461.356 kb on + strand, within Shewana3_1247 at 1461.356 kb on + strand, within Shewana3_1247 at 1461.364 kb on - strand, within Shewana3_1247 at 1461.409 kb on + strand, within Shewana3_1247 at 1461.498 kb on + strand at 1461.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,459,390 + Shewana3_1244 0.63 -1.9 1,459,390 + Shewana3_1244 0.63 -1.1 1,459,453 - Shewana3_1244 0.69 -0.5 1,459,563 - Shewana3_1244 0.78 +0.1 1,459,570 - Shewana3_1244 0.78 -0.0 1,459,798 - +0.1 1,459,907 + -0.7 1,460,157 - Shewana3_1245 0.43 -0.8 1,460,854 - Shewana3_1247 0.21 +0.2 1,460,982 - Shewana3_1247 0.36 +0.6 1,461,091 - Shewana3_1247 0.50 +0.6 1,461,225 - Shewana3_1247 0.66 +0.1 1,461,356 + Shewana3_1247 0.82 -1.4 1,461,356 + Shewana3_1247 0.82 -0.1 1,461,364 - Shewana3_1247 0.83 +1.0 1,461,409 + Shewana3_1247 0.88 -0.1 1,461,498 + +0.6 1,461,643 - -1.9
Or see this region's nucleotide sequence