Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1246

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1244 and Shewana3_1245 are separated by 160 nucleotidesShewana3_1245 and Shewana3_1246 overlap by 20 nucleotidesShewana3_1246 and Shewana3_1247 are separated by 25 nucleotidesShewana3_1247 and Shewana3_1248 are separated by 13 nucleotides Shewana3_1244: Shewana3_1244 - phage integrase family protein (RefSeq), at 1,458,630 to 1,459,829 _1244 Shewana3_1245: Shewana3_1245 - hypothetical protein (RefSeq), at 1,459,990 to 1,460,373 _1245 Shewana3_1246: Shewana3_1246 - transcriptional regulator-like protein (RefSeq), at 1,460,354 to 1,460,659 _1246 Shewana3_1247: Shewana3_1247 - hypothetical protein (RefSeq), at 1,460,685 to 1,461,503 _1247 Shewana3_1248: Shewana3_1248 - hypothetical protein (RefSeq), at 1,461,517 to 1,462,800 _1248 Position (kb) 1460 1461Strain fitness (log2 ratio) -2 -1 0 1at 1459.390 kb on + strand, within Shewana3_1244at 1459.390 kb on + strand, within Shewana3_1244at 1459.453 kb on - strand, within Shewana3_1244at 1459.563 kb on - strand, within Shewana3_1244at 1459.570 kb on - strand, within Shewana3_1244at 1459.798 kb on - strandat 1459.907 kb on + strandat 1460.157 kb on - strand, within Shewana3_1245at 1460.854 kb on - strand, within Shewana3_1247at 1460.982 kb on - strand, within Shewana3_1247at 1461.091 kb on - strand, within Shewana3_1247at 1461.225 kb on - strand, within Shewana3_1247at 1461.356 kb on + strand, within Shewana3_1247at 1461.356 kb on + strand, within Shewana3_1247at 1461.364 kb on - strand, within Shewana3_1247at 1461.409 kb on + strand, within Shewana3_1247at 1461.498 kb on + strandat 1461.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,459,390 + Shewana3_1244 0.63 -1.9
1,459,390 + Shewana3_1244 0.63 -1.1
1,459,453 - Shewana3_1244 0.69 -0.5
1,459,563 - Shewana3_1244 0.78 +0.1
1,459,570 - Shewana3_1244 0.78 -0.0
1,459,798 - +0.1
1,459,907 + -0.7
1,460,157 - Shewana3_1245 0.43 -0.8
1,460,854 - Shewana3_1247 0.21 +0.2
1,460,982 - Shewana3_1247 0.36 +0.6
1,461,091 - Shewana3_1247 0.50 +0.6
1,461,225 - Shewana3_1247 0.66 +0.1
1,461,356 + Shewana3_1247 0.82 -1.4
1,461,356 + Shewana3_1247 0.82 -0.1
1,461,364 - Shewana3_1247 0.83 +1.0
1,461,409 + Shewana3_1247 0.88 -0.1
1,461,498 + +0.6
1,461,643 - -1.9

Or see this region's nucleotide sequence