Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1188 and Shewana3_1189 overlap by 1 nucleotides Shewana3_1189 and Shewana3_1190 are separated by 169 nucleotides Shewana3_1190 and Shewana3_1191 are separated by 68 nucleotides Shewana3_1191 and Shewana3_1192 overlap by 1 nucleotides
Shewana3_1188: Shewana3_1188 - putative oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 1,396,824 to 1,397,981
_1188
Shewana3_1189: Shewana3_1189 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq), at 1,397,981 to 1,398,598
_1189
Shewana3_1190: Shewana3_1190 - hypothetical protein (RefSeq), at 1,398,768 to 1,399,202
_1190
Shewana3_1191: Shewana3_1191 - hypothetical protein (RefSeq), at 1,399,271 to 1,399,561
_1191
Shewana3_1192: Shewana3_1192 - protein of unknown function YGGT (RefSeq), at 1,399,561 to 1,400,109
_1192
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-2
-1
0
1 at 1397.100 kb on - strand, within Shewana3_1188 at 1397.100 kb on - strand, within Shewana3_1188 at 1397.588 kb on + strand, within Shewana3_1188 at 1397.650 kb on - strand, within Shewana3_1188 at 1397.793 kb on + strand, within Shewana3_1188 at 1397.914 kb on + strand at 1397.922 kb on - strand at 1398.032 kb on - strand at 1398.353 kb on - strand, within Shewana3_1189 at 1398.493 kb on + strand, within Shewana3_1189 at 1398.805 kb on + strand at 1399.097 kb on - strand, within Shewana3_1190 at 1399.358 kb on + strand, within Shewana3_1191 at 1399.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,397,100 - Shewana3_1188 0.24 -0.4 1,397,100 - Shewana3_1188 0.24 -1.1 1,397,588 + Shewana3_1188 0.66 -1.1 1,397,650 - Shewana3_1188 0.71 -0.5 1,397,793 + Shewana3_1188 0.84 -0.5 1,397,914 + -0.2 1,397,922 - -0.1 1,398,032 - +0.1 1,398,353 - Shewana3_1189 0.60 -0.3 1,398,493 + Shewana3_1189 0.83 -1.7 1,398,805 + +0.5 1,399,097 - Shewana3_1190 0.76 +0.5 1,399,358 + Shewana3_1191 0.30 -0.1 1,399,559 + -1.9
Or see this region's nucleotide sequence