Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1134 and Shewana3_1135 are separated by 65 nucleotides Shewana3_1135 and Shewana3_1136 are separated by 189 nucleotides Shewana3_1136 and Shewana3_1137 are separated by 30 nucleotides Shewana3_1137 and Shewana3_1138 are separated by 193 nucleotides
Shewana3_1134: Shewana3_1134 - cytochrome B561 (RefSeq), at 1,339,242 to 1,339,931
_1134
Shewana3_1135: Shewana3_1135 - cytochrome c, class II (RefSeq), at 1,339,997 to 1,340,446
_1135
Shewana3_1136: Shewana3_1136 - Trp operon repressor (RefSeq), at 1,340,636 to 1,340,911
_1136
Shewana3_1137: Shewana3_1137 - hypothetical protein (RefSeq), at 1,340,942 to 1,341,319
_1137
Shewana3_1138: Shewana3_1138 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,341,513 to 1,342,181
_1138
Position (kb)
1340
1341 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1339.640 kb on - strand, within Shewana3_1134 at 1339.719 kb on - strand, within Shewana3_1134 at 1339.778 kb on + strand, within Shewana3_1134 at 1339.778 kb on + strand, within Shewana3_1134 at 1339.917 kb on - strand at 1339.943 kb on - strand at 1340.022 kb on - strand at 1340.041 kb on - strand at 1340.186 kb on + strand, within Shewana3_1135 at 1340.186 kb on + strand, within Shewana3_1135 at 1340.318 kb on + strand, within Shewana3_1135 at 1340.397 kb on + strand, within Shewana3_1135 at 1340.541 kb on - strand at 1340.560 kb on - strand at 1340.688 kb on + strand, within Shewana3_1136 at 1340.754 kb on + strand, within Shewana3_1136 at 1340.845 kb on - strand, within Shewana3_1136 at 1340.933 kb on - strand at 1340.940 kb on + strand at 1340.985 kb on - strand, within Shewana3_1137 at 1341.106 kb on - strand, within Shewana3_1137 at 1341.154 kb on + strand, within Shewana3_1137 at 1341.202 kb on + strand, within Shewana3_1137 at 1341.250 kb on + strand, within Shewana3_1137 at 1341.266 kb on + strand, within Shewana3_1137 at 1341.482 kb on + strand at 1341.490 kb on - strand at 1341.514 kb on - strand at 1341.863 kb on - strand, within Shewana3_1138
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,339,640 - Shewana3_1134 0.58 -4.4 1,339,719 - Shewana3_1134 0.69 -0.8 1,339,778 + Shewana3_1134 0.78 +0.2 1,339,778 + Shewana3_1134 0.78 +0.6 1,339,917 - +0.8 1,339,943 - -0.9 1,340,022 - +0.3 1,340,041 - -1.3 1,340,186 + Shewana3_1135 0.42 +0.4 1,340,186 + Shewana3_1135 0.42 -0.5 1,340,318 + Shewana3_1135 0.71 +0.5 1,340,397 + Shewana3_1135 0.89 +0.4 1,340,541 - -1.0 1,340,560 - +0.2 1,340,688 + Shewana3_1136 0.19 +0.5 1,340,754 + Shewana3_1136 0.43 +0.3 1,340,845 - Shewana3_1136 0.76 +1.1 1,340,933 - +0.4 1,340,940 + +0.4 1,340,985 - Shewana3_1137 0.11 +0.1 1,341,106 - Shewana3_1137 0.43 +0.2 1,341,154 + Shewana3_1137 0.56 +0.3 1,341,202 + Shewana3_1137 0.69 +0.3 1,341,250 + Shewana3_1137 0.81 +0.3 1,341,266 + Shewana3_1137 0.86 +0.2 1,341,482 + +0.2 1,341,490 - -0.9 1,341,514 - -2.1 1,341,863 - Shewana3_1138 0.52 -0.8
Or see this region's nucleotide sequence