Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0041 and Shewana3_R0042 are separated by 18 nucleotides Shewana3_R0042 and Shewana3_R0043 are separated by 28 nucleotides Shewana3_R0043 and Shewana3_R0044 are separated by 82 nucleotides Shewana3_R0044 and Shewana3_R0045 are separated by 43 nucleotides Shewana3_R0045 and Shewana3_R0046 are separated by 44 nucleotides Shewana3_R0046 and Shewana3_R0047 are separated by 36 nucleotides Shewana3_R0047 and Shewana3_R0048 are separated by 94 nucleotides Shewana3_R0048 and valS are separated by 406 nucleotides
Shewana3_R0041: Shewana3_R0041 - tRNA-Ser (RefSeq), at 1,332,641 to 1,332,732
_R0041
Shewana3_R0042: Shewana3_R0042 - tRNA-Arg (RefSeq), at 1,332,751 to 1,332,827
_R0042
Shewana3_R0043: Shewana3_R0043 - tRNA-Arg (RefSeq), at 1,332,856 to 1,332,932
_R0043
Shewana3_R0044: Shewana3_R0044 - tRNA-Arg (RefSeq), at 1,333,015 to 1,333,091
_R0044
Shewana3_R0045: Shewana3_R0045 - tRNA-Arg (RefSeq), at 1,333,135 to 1,333,211
_R0045
Shewana3_R0046: Shewana3_R0046 - tRNA-Arg (RefSeq), at 1,333,256 to 1,333,332
_R0046
Shewana3_R0047: Shewana3_R0047 - tRNA-Ser (RefSeq), at 1,333,369 to 1,333,460
_R0047
Shewana3_R0048: Shewana3_R0048 - tRNA-Arg (RefSeq), at 1,333,555 to 1,333,631
_R0048
Shewana3_1131: valS - valyl-tRNA synthetase (RefSeq), at 1,334,038 to 1,336,914
valS
Position (kb)
1333
1334 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1333.713 kb on + strand at 1333.853 kb on + strand at 1333.901 kb on + strand at 1333.957 kb on + strand at 1333.957 kb on + strand at 1334.036 kb on - strand at 1334.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,333,713 + -0.7 1,333,853 + -0.5 1,333,901 + +0.1 1,333,957 + -0.4 1,333,957 + +0.4 1,334,036 - +2.8 1,334,050 - +0.5
Or see this region's nucleotide sequence