Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1062

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1062 and Shewana3_1063 are separated by 704 nucleotides Shewana3_1062: Shewana3_1062 - nucleoside recognition domain-containing protein (RefSeq), at 1,247,092 to 1,248,450 _1062 Shewana3_1063: Shewana3_1063 - hypothetical protein (RefSeq), at 1,249,155 to 1,249,871 _1063 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1246.126 kb on - strandat 1246.146 kb on - strandat 1246.147 kb on - strandat 1246.189 kb on + strandat 1246.209 kb on - strandat 1246.228 kb on + strandat 1246.228 kb on + strandat 1246.247 kb on + strandat 1246.288 kb on + strandat 1246.306 kb on - strandat 1246.321 kb on + strandat 1246.321 kb on + strandat 1246.725 kb on + strandat 1246.884 kb on + strandat 1246.892 kb on - strandat 1247.197 kb on + strandat 1247.280 kb on + strand, within Shewana3_1062at 1247.417 kb on + strand, within Shewana3_1062at 1247.540 kb on - strand, within Shewana3_1062at 1247.578 kb on - strand, within Shewana3_1062at 1247.625 kb on + strand, within Shewana3_1062at 1247.641 kb on - strand, within Shewana3_1062at 1247.763 kb on + strand, within Shewana3_1062at 1247.905 kb on + strand, within Shewana3_1062at 1248.055 kb on + strand, within Shewana3_1062at 1248.060 kb on + strand, within Shewana3_1062at 1248.155 kb on + strand, within Shewana3_1062at 1248.250 kb on - strand, within Shewana3_1062at 1248.288 kb on - strand, within Shewana3_1062at 1248.312 kb on - strand, within Shewana3_1062at 1248.373 kb on - strandat 1248.422 kb on + strandat 1248.453 kb on + strandat 1248.460 kb on + strandat 1248.468 kb on - strandat 1249.105 kb on - strandat 1249.122 kb on + strandat 1249.251 kb on - strand, within Shewana3_1063

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,246,126 - +0.4
1,246,146 - +0.6
1,246,147 - +0.8
1,246,189 + -0.3
1,246,209 - -1.4
1,246,228 + +0.5
1,246,228 + -0.0
1,246,247 + +0.8
1,246,288 + -0.9
1,246,306 - -0.4
1,246,321 + +0.1
1,246,321 + -0.2
1,246,725 + +0.5
1,246,884 + -0.9
1,246,892 - +0.6
1,247,197 + -3.6
1,247,280 + Shewana3_1062 0.14 -2.3
1,247,417 + Shewana3_1062 0.24 -2.4
1,247,540 - Shewana3_1062 0.33 -2.1
1,247,578 - Shewana3_1062 0.36 -2.9
1,247,625 + Shewana3_1062 0.39 -3.0
1,247,641 - Shewana3_1062 0.40 -2.7
1,247,763 + Shewana3_1062 0.49 -1.9
1,247,905 + Shewana3_1062 0.60 -1.2
1,248,055 + Shewana3_1062 0.71 -2.3
1,248,060 + Shewana3_1062 0.71 -3.1
1,248,155 + Shewana3_1062 0.78 -2.7
1,248,250 - Shewana3_1062 0.85 -3.0
1,248,288 - Shewana3_1062 0.88 -3.1
1,248,312 - Shewana3_1062 0.90 -3.1
1,248,373 - -2.5
1,248,422 + -2.2
1,248,453 + -4.4
1,248,460 + -2.8
1,248,468 - +0.3
1,249,105 - +0.6
1,249,122 + +0.7
1,249,251 - Shewana3_1063 0.13 -0.1

Or see this region's nucleotide sequence