Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0974

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0973 and Shewana3_0974 are separated by 11 nucleotidesShewana3_0974 and Shewana3_0975 overlap by 4 nucleotidesShewana3_0975 and Shewana3_0976 are separated by 78 nucleotides Shewana3_0973: Shewana3_0973 - endonuclease/exonuclease/phosphatase (RefSeq), at 1,143,851 to 1,144,984 _0973 Shewana3_0974: Shewana3_0974 - hypothetical protein (RefSeq), at 1,144,996 to 1,145,811 _0974 Shewana3_0975: Shewana3_0975 - hypothetical protein (RefSeq), at 1,145,808 to 1,146,689 _0975 Shewana3_0976: Shewana3_0976 - putative lipoprotein (RefSeq), at 1,146,768 to 1,147,220 _0976 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1144.072 kb on - strand, within Shewana3_0973at 1144.072 kb on - strand, within Shewana3_0973at 1144.292 kb on - strand, within Shewana3_0973at 1144.369 kb on - strand, within Shewana3_0973at 1144.381 kb on + strand, within Shewana3_0973at 1144.524 kb on + strand, within Shewana3_0973at 1144.811 kb on + strand, within Shewana3_0973at 1144.821 kb on + strand, within Shewana3_0973at 1144.893 kb on + strandat 1144.901 kb on - strandat 1144.933 kb on + strandat 1145.120 kb on + strand, within Shewana3_0974at 1145.173 kb on + strand, within Shewana3_0974at 1145.392 kb on + strand, within Shewana3_0974at 1145.665 kb on - strand, within Shewana3_0974at 1145.833 kb on + strandat 1146.287 kb on + strand, within Shewana3_0975at 1146.344 kb on - strand, within Shewana3_0975at 1146.379 kb on - strand, within Shewana3_0975at 1146.408 kb on + strand, within Shewana3_0975at 1146.409 kb on + strand, within Shewana3_0975at 1146.451 kb on + strand, within Shewana3_0975at 1146.464 kb on + strand, within Shewana3_0975at 1146.472 kb on - strand, within Shewana3_0975at 1146.477 kb on - strand, within Shewana3_0975at 1146.559 kb on + strand, within Shewana3_0975at 1146.668 kb on + strandat 1146.698 kb on - strandat 1146.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,144,072 - Shewana3_0973 0.19 -0.6
1,144,072 - Shewana3_0973 0.19 -0.9
1,144,292 - Shewana3_0973 0.39 +0.1
1,144,369 - Shewana3_0973 0.46 -0.7
1,144,381 + Shewana3_0973 0.47 +0.0
1,144,524 + Shewana3_0973 0.59 +0.1
1,144,811 + Shewana3_0973 0.85 -0.9
1,144,821 + Shewana3_0973 0.86 -4.7
1,144,893 + -0.1
1,144,901 - +0.5
1,144,933 + +0.0
1,145,120 + Shewana3_0974 0.15 +0.3
1,145,173 + Shewana3_0974 0.22 +0.4
1,145,392 + Shewana3_0974 0.49 +0.2
1,145,665 - Shewana3_0974 0.82 +0.3
1,145,833 + -1.0
1,146,287 + Shewana3_0975 0.54 +0.5
1,146,344 - Shewana3_0975 0.61 -0.2
1,146,379 - Shewana3_0975 0.65 +0.4
1,146,408 + Shewana3_0975 0.68 +0.2
1,146,409 + Shewana3_0975 0.68 +0.6
1,146,451 + Shewana3_0975 0.73 +0.4
1,146,464 + Shewana3_0975 0.74 -0.2
1,146,472 - Shewana3_0975 0.75 -0.1
1,146,477 - Shewana3_0975 0.76 +0.3
1,146,559 + Shewana3_0975 0.85 -0.6
1,146,668 + +0.6
1,146,698 - -0.7
1,146,698 - +0.5

Or see this region's nucleotide sequence