Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0967

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0966 and Shewana3_0967 are separated by 168 nucleotidesShewana3_0967 and carB are separated by 27 nucleotides Shewana3_0966: Shewana3_0966 - dihydrodipicolinate reductase (RefSeq), at 1,133,235 to 1,134,047 _0966 Shewana3_0967: Shewana3_0967 - carbamoyl phosphate synthase small subunit (RefSeq), at 1,134,216 to 1,135,376 _0967 Shewana3_0968: carB - carbamoyl phosphate synthase large subunit (RefSeq), at 1,135,404 to 1,138,628 carB Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1133.218 kb on + strandat 1134.666 kb on + strand, within Shewana3_0967at 1134.674 kb on + strand, within Shewana3_0967at 1134.674 kb on - strand, within Shewana3_0967at 1134.681 kb on + strand, within Shewana3_0967at 1134.792 kb on + strand, within Shewana3_0967at 1134.911 kb on - strand, within Shewana3_0967at 1134.966 kb on - strand, within Shewana3_0967at 1135.046 kb on - strand, within Shewana3_0967at 1135.083 kb on - strand, within Shewana3_0967at 1135.223 kb on + strand, within Shewana3_0967at 1135.236 kb on + strand, within Shewana3_0967at 1135.269 kb on - strandat 1135.361 kb on + strandat 1135.555 kb on - strandat 1135.821 kb on + strand, within carBat 1135.855 kb on + strand, within carBat 1136.029 kb on + strand, within carBat 1136.092 kb on - strand, within carBat 1136.203 kb on + strand, within carBat 1136.219 kb on - strand, within carBat 1136.258 kb on + strand, within carBat 1136.258 kb on + strand, within carB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,133,218 + +0.2
1,134,666 + Shewana3_0967 0.39 -8.3
1,134,674 + Shewana3_0967 0.39 -7.1
1,134,674 - Shewana3_0967 0.39 -5.9
1,134,681 + Shewana3_0967 0.40 -4.5
1,134,792 + Shewana3_0967 0.50 -6.7
1,134,911 - Shewana3_0967 0.60 -3.1
1,134,966 - Shewana3_0967 0.65 -6.4
1,135,046 - Shewana3_0967 0.71 -6.0
1,135,083 - Shewana3_0967 0.75 -5.5
1,135,223 + Shewana3_0967 0.87 -6.6
1,135,236 + Shewana3_0967 0.88 -5.8
1,135,269 - -3.9
1,135,361 + -0.3
1,135,555 - -4.9
1,135,821 + carB Shewana3_0968 0.13 -5.6
1,135,855 + carB Shewana3_0968 0.14 -6.6
1,136,029 + carB Shewana3_0968 0.19 -8.2
1,136,092 - carB Shewana3_0968 0.21 -2.3
1,136,203 + carB Shewana3_0968 0.25 -4.7
1,136,219 - carB Shewana3_0968 0.25 -3.7
1,136,258 + carB Shewana3_0968 0.26 -7.4
1,136,258 + carB Shewana3_0968 0.26 -6.3

Or see this region's nucleotide sequence