Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0781 and Shewana3_0782 are separated by 162 nucleotides Shewana3_0782 and Shewana3_0783 are separated by 97 nucleotides Shewana3_0783 and Shewana3_0784 are separated by 151 nucleotides Shewana3_0784 and Shewana3_0785 are separated by 69 nucleotides
Shewana3_0781: Shewana3_0781 - VanZ family protein (RefSeq), at 903,568 to 903,930
_0781
Shewana3_0782: Shewana3_0782 - putative nucleotide-binding protein (RefSeq), at 904,093 to 904,578
_0782
Shewana3_0783: Shewana3_0783 - major facilitator transporter (RefSeq), at 904,676 to 906,067
_0783
Shewana3_0784: Shewana3_0784 - hypothetical protein (RefSeq), at 906,219 to 906,539
_0784
Shewana3_0785: Shewana3_0785 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 906,609 to 907,196
_0785
Position (kb) 904
905
906
907 Strain fitness (log2 ratio) -1
0
1 at 903.687 kb on - strand, within Shewana3_0781 at 903.818 kb on - strand, within Shewana3_0781 at 904.074 kb on + strand at 904.486 kb on + strand, within Shewana3_0782 at 904.542 kb on + strand at 904.593 kb on - strand at 904.616 kb on + strand at 904.632 kb on + strand at 904.698 kb on + strand at 904.801 kb on - strand at 904.854 kb on - strand, within Shewana3_0783 at 905.269 kb on - strand, within Shewana3_0783 at 905.759 kb on - strand, within Shewana3_0783 at 905.872 kb on - strand, within Shewana3_0783 at 906.207 kb on - strand at 906.212 kb on + strand at 906.217 kb on + strand at 906.217 kb on + strand at 906.230 kb on + strand at 906.302 kb on + strand, within Shewana3_0784 at 906.578 kb on + strand at 906.586 kb on - strand at 906.752 kb on - strand, within Shewana3_0785 at 906.946 kb on - strand, within Shewana3_0785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 903,687 - Shewana3_0781 0.33 +0.2 903,818 - Shewana3_0781 0.69 -0.2 904,074 + +0.1 904,486 + Shewana3_0782 0.81 -0.0 904,542 + +0.3 904,593 - +0.8 904,616 + +0.3 904,632 + +0.2 904,698 + -0.3 904,801 - +0.1 904,854 - Shewana3_0783 0.13 -0.4 905,269 - Shewana3_0783 0.43 -1.4 905,759 - Shewana3_0783 0.78 -1.3 905,872 - Shewana3_0783 0.86 -1.4 906,207 - -1.0 906,212 + -1.1 906,217 + -0.7 906,217 + +0.4 906,230 + -0.9 906,302 + Shewana3_0784 0.26 -0.9 906,578 + -0.4 906,586 - -1.4 906,752 - Shewana3_0785 0.24 +0.3 906,946 - Shewana3_0785 0.57 +0.1
Or see this region's nucleotide sequence