Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0734 and Shewana3_0735 are separated by 416 nucleotides Shewana3_0735 and Shewana3_0736 are separated by 142 nucleotides
Shewana3_0734: Shewana3_0734 - porin (RefSeq), at 852,715 to 853,779
_0734
Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029
_0735
Shewana3_0736: Shewana3_0736 - ATPase domain-containing protein (RefSeq), at 855,172 to 856,803
_0736
Position (kb) 854
855
856 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 853.359 kb on - strand, within Shewana3_0734 at 853.409 kb on - strand, within Shewana3_0734 at 853.592 kb on + strand, within Shewana3_0734 at 853.846 kb on - strand at 853.851 kb on - strand at 853.851 kb on - strand at 853.859 kb on - strand at 854.042 kb on + strand at 854.122 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.132 kb on + strand at 854.153 kb on + strand at 854.198 kb on - strand at 854.245 kb on + strand at 854.245 kb on + strand at 854.542 kb on + strand, within Shewana3_0735 at 854.581 kb on + strand, within Shewana3_0735 at 854.675 kb on - strand, within Shewana3_0735 at 854.855 kb on - strand, within Shewana3_0735 at 855.105 kb on + strand at 855.220 kb on + strand at 855.295 kb on - strand at 855.325 kb on + strand at 855.325 kb on + strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.484 kb on + strand, within Shewana3_0736 at 855.493 kb on + strand, within Shewana3_0736 at 855.561 kb on - strand, within Shewana3_0736 at 855.580 kb on - strand, within Shewana3_0736 at 855.677 kb on - strand, within Shewana3_0736 at 855.735 kb on - strand, within Shewana3_0736 at 855.973 kb on + strand, within Shewana3_0736 at 855.991 kb on - strand, within Shewana3_0736
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 853,359 - Shewana3_0734 0.60 -0.8 853,409 - Shewana3_0734 0.65 -0.9 853,592 + Shewana3_0734 0.82 +0.3 853,846 - -0.5 853,851 - +0.7 853,851 - +0.4 853,859 - +0.3 854,042 + -1.0 854,122 + +0.4 854,132 + +0.7 854,132 + +0.3 854,132 + +0.4 854,132 + -0.7 854,132 + +0.4 854,153 + -1.2 854,198 - -1.7 854,245 + -1.3 854,245 + -1.7 854,542 + Shewana3_0735 0.41 -0.9 854,581 + Shewana3_0735 0.46 -0.6 854,675 - Shewana3_0735 0.57 -1.3 854,855 - Shewana3_0735 0.79 -4.7 855,105 + -0.7 855,220 + -0.8 855,295 - +0.0 855,325 + +0.2 855,325 + +0.1 855,333 - -0.6 855,333 - -0.1 855,333 - +0.1 855,333 - -0.4 855,333 - +0.2 855,333 - +0.5 855,484 + Shewana3_0736 0.19 -0.5 855,493 + Shewana3_0736 0.20 +0.3 855,561 - Shewana3_0736 0.24 +0.4 855,580 - Shewana3_0736 0.25 -0.8 855,677 - Shewana3_0736 0.31 +0.1 855,735 - Shewana3_0736 0.34 -0.2 855,973 + Shewana3_0736 0.49 -2.4 855,991 - Shewana3_0736 0.50 -0.2
Or see this region's nucleotide sequence