Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0434

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0433 and Shewana3_0434 are separated by 174 nucleotidesShewana3_0434 and hemE are separated by 447 nucleotides Shewana3_0433: Shewana3_0433 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq), at 501,912 to 504,584 _0433 Shewana3_0434: Shewana3_0434 - anti-RNA polymerase sigma 70 factor (RefSeq), at 504,759 to 505,256 _0434 Shewana3_0435: hemE - uroporphyrinogen decarboxylase (RefSeq), at 505,704 to 506,768 hemE Position (kb) 504 505 506Strain fitness (log2 ratio) -1 0 1at 504.658 kb on + strandat 504.666 kb on - strandat 504.740 kb on + strandat 504.740 kb on + strandat 505.160 kb on - strand, within Shewana3_0434at 505.283 kb on - strandat 505.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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504,658 + +0.3
504,666 - +0.3
504,740 + +0.5
504,740 + +0.5
505,160 - Shewana3_0434 0.81 -1.2
505,283 - +0.8
505,429 - +0.4

Or see this region's nucleotide sequence